Basic Information

Insect: Epinotia brunnichana
Gene Symbol: -
Assembly: GCA_963854355.1
Location: OY977961.1:16089949-16091337[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.5 4.8e+02 2.6 0.0 17 32 278 293 277 295 0.91

2 9 0.5 4.8e+02 2.6 0.0 17 32 297 312 296 314 0.91

3 9 0.5 4.8e+02 2.6 0.0 17 32 316 331 315 333 0.91

4 9 0.5 4.8e+02 2.6 0.0 17 32 335 350 334 352 0.91

5 9 0.5 4.8e+02 2.6 0.0 17 32 354 369 353 371 0.91

6 9 0.5 4.8e+02 2.6 0.0 17 32 373 388 372 390 0.91

7 9 0.5 4.8e+02 2.6 0.0 17 32 392 407 391 409 0.91

8 9 0.5 4.8e+02 2.6 0.0 17 32 411 426 410 428 0.91

9 9 0.38 3.7e+02 2.9 0.0 17 32 430 445 429 454 0.85

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.5	4.8e+02	2.6	17	32	278	293	277	295	0.91
2	9	0.5	4.8e+02	2.6	17	32	297	312	296	314	0.91
3	9	0.5	4.8e+02	2.6	17	32	316	331	315	333	0.91
4	9	0.5	4.8e+02	2.6	17	32	335	350	334	352	0.91
5	9	0.5	4.8e+02	2.6	17	32	354	369	353	371	0.91
6	9	0.5	4.8e+02	2.6	17	32	373	388	372	390	0.91
7	9	0.5	4.8e+02	2.6	17	32	392	407	391	409	0.91
8	9	0.5	4.8e+02	2.6	17	32	411	426	410	428	0.91
9	9	0.38	3.7e+02	2.9	17	32	430	445	429	454	0.85

Sequence Information

Coding Sequence: ATGTACTTCAAAGCTTCCACCAAAGTGAAAAGTCCAGCAGGCCTCAGCGAAGCATTTGGGGTGGAAGTAGGGGTTCACCAAGGTTCAGCTCTTAGTCCGCTACTATTTAACCTCGTAATGGAACTTATCACTAAAGAAATTCAAGCCCCGCTCCCAATCAACCTCCTgtatgcggacgatatagtgCTCATTGCTAACACAGCAAGTGAACTGCAAGACACTTTACACCTTTGGGTCAACACTCTTGAAAAATCAGGTCTGAAAGTGAGCAGATCCAAAACAGAATATCTGCAGTGTAGATTCAGCAAGAACAGCCAGCCCTCTGCTGTGTGCTACCCTGACTCGAAACCGGTGCCAAAAGTCACACGTTTTAAGTACCTGGGATCAGTCATCACAGAGGACGGAAATATAGAGGAAGATGTAGCGCAAAGACTTAAAGTGGGCTGGCAAAAGTGGCGTTCATTGACTGGAGTTTTGTGCGACACTCGTATGCCAGTGCGCACAAAAGGAAAGGTCTACAGAATGGCGATTAGACCAGCGCTACTCTACGGTTCTGAGTGCTGGCCTGTCAAAGAAAACAACGTGCAAAAACTCCACACGGCCGAAATGAAGATGCTTCGTTGGTCGGGAGGGGTTACAAGGCtggacaaaattaaaaatgagcACATTCGTGGTAGTTTTAAGGTGGCCCCTATACCCGAAAAGCTAACAGAACACCGCCTAAGGTGGTACGGCCACGTGATGCGTAGGGATGAAGAGTACGTGGTCAAAAAAGCTCTAAACCTGCCGGAGaaaaagagaggcagaggacgACCGCCGTCaacatggtggaccagcatcaCAAAACTAGCAAGTAGGCATAATTTACCCGACCCGACaacatggtggaccagcatcaCAAAACTAGCAAGTAGGCATAATTTACCCGACCCGACaacatggtggaccagcatcaCAAAACTAGCAAGTAGGCATAATTTACCCGACCCGACaacatggtggaccagcatcaCAAAACTAGCAAGTAGGCATAATTTACCCGACCCGACaacatggtggaccagcatcaCAAAACTAGCAAGTAGGCATAATTTACCCGACCCGACaacatggtggaccagcatcaCAAAACTAGCAAGTAGGCATAATTTACCCGACCCGACaacatggtggaccagcatcaCAAAACTAGCAAGTAGGCATAATTTACCCGACCCGACaacatggtggaccagcatcaCAAAACTAGCAAGTAGGCATAATTTACCCGACCCGACaacatggtggaccagcatcaCAAAACTAGCAAGTAGGCATAATTTACCCGACCCGACAACCCTCGACAGAGTGTCGTGGCGCAAaataattaggagagccgaccctgcCTAA
Protein Sequence: MYFKASTKVKSPAGLSEAFGVEVGVHQGSALSPLLFNLVMELITKEIQAPLPINLLYADDIVLIANTASELQDTLHLWVNTLEKSGLKVSRSKTEYLQCRFSKNSQPSAVCYPDSKPVPKVTRFKYLGSVITEDGNIEEDVAQRLKVGWQKWRSLTGVLCDTRMPVRTKGKVYRMAIRPALLYGSECWPVKENNVQKLHTAEMKMLRWSGGVTRLDKIKNEHIRGSFKVAPIPEKLTEHRLRWYGHVMRRDEEYVVKKALNLPEKKRGRGRPPSTWWTSITKLASRHNLPDPTTWWTSITKLASRHNLPDPTTWWTSITKLASRHNLPDPTTWWTSITKLASRHNLPDPTTWWTSITKLASRHNLPDPTTWWTSITKLASRHNLPDPTTWWTSITKLASRHNLPDPTTWWTSITKLASRHNLPDPTTWWTSITKLASRHNLPDPTTLDRVSWRKIIRRADPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -