Ebru013666.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977937.1:12782651-12791946[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-12 1.6e-09 39.3 0.0 4 39 18 53 15 58 0.91
Sequence Information
- Coding Sequence
- ATGGTTAGGAACTACAAAAGAAAATCGGATCGCGGTGGCTGGGACAGTCAAAAAATGGAGTTAGCCATCAAAGATGTCTCAAGTGGTAAACTTAGCTGCAAACGAGCGTCCCAAACATACGATGTTCCACGTTCGACACTTCAAAGAAAAGTACAAGAGTTTACGAAGAGCCAAACTATAGAGAGGAAGCCTTTGGGTTCTTTCAAACCAATATTTACAAGTGCACAAGAAGAAGAGCTGGCTACATATATTAAAGATATGGAAAGTCGCTTGTTTGGCCTATCTCCCAAAGAAGTGCGCCAACTGGCCTATCAGTTAGCTGAAAAAAATCGCATACCTCATAATTTTGATCAAAATACCCGAACAGCAGGTGAAGATTGGTTAGCTAATTTCTTAAAACGTAACCCTACACTCTCCCTTCGAAAACCAGAGGCGACATCAGCAGCTCGTGCAATGGGTTTTAATCGAGAAGCGGTGGGTTCATTCTTCAATCTTTTGACTGAAACTATAGATAGGTTCAATATAACAGCAGATAGACTGTTCAACGTCGATGAAACTGGAATGACGACGGTTGCAAAAAGCTTAGGAAAAGTTATCGCTACTAAAGGAAGAAAACAAGTAGGATCTTTATCATCAGCAGAAAGAGGACAATTATTCACAATTGAAATATGTATGAGTGCTAGTGGATCGTTTATGCCACCCATGTTCATATTTCCCAGGAAAAGAATGAAACCTGAGCTTATGGATGGAGCTCCTCCTAATTCTTGGGCAGAGTGCAACGAAAAAGGTTGGATTACACATGAACTGTTTTTGAAATGGTTCACTAAGTTTGTGATATGGTCCAAAGCCAGTAAAGAAGTCCCCGTTTTATTGTTGTTGGATGGTCATGTAAGCCATGTCAAGAGCTTAGATGTGATCAATTTAGCTAGAGAAAAGGGAGTTCATATTCTTTGCTTTCCACCGCACTGCACACATCGCCTACAACCGCTAGATGTTAGCTTTATGAAACCATTGAGCACCTACTATGGAGAAGAAGTCAAAAAATGGTTGCGGACTAATCCCGGGAGGGTGGTAACCCACTACCAGGTGGCAAACCTGTTCTGTAATGCCTTTTTGAAGGCTGCTACAATGCTTGTTGCTATAAATGGATTTCGTAAAACCGGCATATGGCCTGTGAACCCTGATGTTTTTACCGATGCTGATTTTTTGGCTGCAGATACCACAGACCTACCGTTGACAAATGATCAAGTCTCTTCAGAAACACCTCATCCACCAATTTCAACGTCTGCACAAAACCAGATAATGCCTGCAACTCTTGCTTTAACAGCTGCATCGACCATACAACCACCTATAATTCCGGATGCACAGCAGTCTGTAAATATCGATTCAGCCTCGTCGATAAACACACAGTCACTTACGGTTCTCAATCCAGACTGTACAATAGGTTTACAGCTGTTTTCAAATCTCGATTTAGAGACTGCGACGGATGTCCGACCACCTGTAACTCCACCTCCAGGTCCATCCTCTTCTTTTGATGTTTTGACTCCTAGTAACATCTTGCCGGTTCCCAAAGCATGTGGGCAAAAGAGAGTCAGCAGAAAGCGTGGTAAGACCGCTATTATTACAAGTTCGCCTTATAAACAGGAACTAGAACAATCAAAGCCtgccaaaaaaaatacaaagaaagaccctaaaaaagtggtgaaaaaaaagaaaacaggaAAGACTAACAAGGAGAATTGCTCAGAGGATGAAGACGTAGAGTGCCTTTATTGTGGAGATTGGTACTCTCAATCCAAAGAGGGTTGGGACATGATGTACTACCCCATTAGCCCCAACGAATGGCCTAACATGGCATCGGACAAGGATACAATCAATAAAGCTGCCCGCGGTATTTACGAGATGCAAGAGACTGATAGCGAATCAGAAGAGGAGGAGGAATCATTCCGAAATAACGAGTCTGACGTAACAGCCTCCTAG
- Protein Sequence
- MVRNYKRKSDRGGWDSQKMELAIKDVSSGKLSCKRASQTYDVPRSTLQRKVQEFTKSQTIERKPLGSFKPIFTSAQEEELATYIKDMESRLFGLSPKEVRQLAYQLAEKNRIPHNFDQNTRTAGEDWLANFLKRNPTLSLRKPEATSAARAMGFNREAVGSFFNLLTETIDRFNITADRLFNVDETGMTTVAKSLGKVIATKGRKQVGSLSSAERGQLFTIEICMSASGSFMPPMFIFPRKRMKPELMDGAPPNSWAECNEKGWITHELFLKWFTKFVIWSKASKEVPVLLLLDGHVSHVKSLDVINLAREKGVHILCFPPHCTHRLQPLDVSFMKPLSTYYGEEVKKWLRTNPGRVVTHYQVANLFCNAFLKAATMLVAINGFRKTGIWPVNPDVFTDADFLAADTTDLPLTNDQVSSETPHPPISTSAQNQIMPATLALTAASTIQPPIIPDAQQSVNIDSASSINTQSLTVLNPDCTIGLQLFSNLDLETATDVRPPVTPPPGPSSSFDVLTPSNILPVPKACGQKRVSRKRGKTAIITSSPYKQELEQSKPAKKNTKKDPKKVVKKKKTGKTNKENCSEDEDVECLYCGDWYSQSKEGWDMMYYPISPNEWPNMASDKDTINKAARGIYEMQETDSESEEEEESFRNNESDVTAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00657072; iTF_00657073; iTF_00657074; iTF_00657075; iTF_00657076; iTF_00657077; iTF_00657078; iTF_00657079; iTF_00657080; iTF_00657081; iTF_00657082; iTF_00657083; iTF_00657084; iTF_00657085;
- 90% Identity
- iTF_00657072;
- 80% Identity
- iTF_00657072;