Basic Information

Transcription Factor Domain

TF Family: zf-GATA
Domain: zf-GATA domain
PFAM: PF00320
TF Group: Zinc-Coordinating Group
Description: This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.011 48 4.8 0.1 21 29 54 62 49 65 0.82

2 5 0.013 59 4.5 0.2 22 29 75 82 70 85 0.80

3 5 0.00049 2.2 9.1 0.2 20 29 93 102 89 105 0.85

4 5 0.00049 2.2 9.1 0.2 20 29 113 122 109 125 0.85

5 5 0.01 45 4.9 0.1 21 29 134 142 130 145 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.011	48	4.8	0.1	21	29	54	62	49	65	0.82
2	5	0.013	59	4.5	0.2	22	29	75	82	70	85	0.80
3	5	0.00049	2.2	9.1	0.2	20	29	93	102	89	105	0.85
4	5	0.00049	2.2	9.1	0.2	20	29	113	122	109	125	0.85
5	5	0.01	45	4.9	0.1	21	29	134	142	130	145	0.81

Coding Sequence: ATGCCTGGAGGCATGCACAACTTTCTTGGACGCTCTTGGCTGCGGTTGATGAGCGAGTTCTCATATCTGAATGGTCCTGATGCTAGTTCTCTAGAAGCCAGCGAGCAAGGAGCATTGGGAGCGGAGCCACGAGTTGCCGACTCCGTGCAACAGTTGCCGACtacgtgcaacagctgccgacTTCATGCAACAGCTGCTGACTccgtgcaacagctgccgacTACGTGCAACAACTGCCGACTTcgtgcaacagctgccgacTCCGTGCAACAGCTGCTGACTCTGTGCAACAGCTGCCGACtacgtgcaacagctgccgacTCCGTGCAACAGCTGCTGACTCTGTGCAACAGCTGCCGACTCCGTGCAACAGCTGCTGACTCTGTGCAACAGCTGCCGACtacgtgcaacagctgccgacTCCGTGCAACAGCTGCTGCGGGTGTTGGTGATGAAGAGCGGAAGATGCAGTCGAGGACGATGCACGGTCAGGAGAGGCCATGTTGGATCTTCGACGGTTTTGAAGACGCCTTAAACAGGCTCGGttga
Protein Sequence: MPGGMHNFLGRSWLRLMSEFSYLNGPDASSLEASEQGALGAEPRVADSVQQLPTTCNSCRLHATAADSVQQLPTTCNNCRLRATAADSVQQLLTLCNSCRLRATAADSVQQLLTLCNSCRLRATAADSVQQLPTTCNSCRLRATAAAGVGDEERKMQSRTMHGQERPCWIFDGFEDALNRLG

Sequence clustering based on sequence similarity using MMseqs2