Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00024 0.019 16.5 0.3 1 23 44 66 44 66 0.96

2 5 7.2e-06 0.00058 21.3 0.8 1 23 78 100 78 100 0.97

3 5 0.00057 0.047 15.3 1.6 1 23 112 135 112 135 0.98

4 5 3.3 2.7e+02 3.5 3.3 2 23 208 229 208 229 0.92

5 5 0.002 0.17 13.5 3.6 1 20 235 254 235 256 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00024	0.019	16.5	0.3	1	23	44	66	44	66	0.96
2	5	7.2e-06	0.00058	21.3	0.8	1	23	78	100	78	100	0.97
3	5	0.00057	0.047	15.3	1.6	1	23	112	135	112	135	0.98
4	5	3.3	2.7e+02	3.5	3.3	2	23	208	229	208	229	0.92
5	5	0.002	0.17	13.5	3.6	1	20	235	254	235	256	0.93

Coding Sequence: atGTACAAGAACAGCAAAAACACCCCCAATCGAACAAGGAATCACTGTGAAATATGTGATAAAACTATTATAGGCAGTTCGTACAAATTCAAGTCACATTTATTTCACCACGGCGCTATTAATTCTCGATTTGAATGCCCGTATTGCGTCAAGGCGTTCTTCAGAATTGACGCATATAAACGCCATGTGGGATCCCACAATAGTGTACGAGagaaaataaaactgaaaagaTATATATGTGATTATTGCGAACGGAGTTTTGCTGATAAAAGAAACTTGATTTACCACTTCAAAGTGCATGATGACTCTTTTCATGGACGGCCGGATATAGGGTTTAAATGTGAAGCATGCGGGGTGTCCTACTGCGAGAACAGACTGCTCAGATACCACATCAGAAGAGAACATTTCAATTTACAAGTTAAAGAGGAGTTACACTACAAAAAAACTTTGAATGAGACTTGGATCGAGGCAGTCAAAGACTCTAAAGACTATGTGAAAATGACTAAAGTAAACAACAACACGATTACTATTAAAAAATGTGTAAAACAAGAGTATTCTATAAACAAAGCTAAATTAACGGATCTATCTGCCATGTATTTAACGAAGCAATATGCTAAAGGGACATGTGACTATTGCAAGAAAGAGATGCTGAAGAAGAGCCTACGGCTGCATATACGGGAGAAACACTTGAATGTCCGTAAGTTCAACTGTGAGACATGTAAACGGACTTTTAAGAGGCATTATCAGCTGGTGGATCACGAGTGCGGAAAAATTAGGAGACGGAGAAAAGACAGACAAGCTACAGCAGAAATCAAGAATATAGGCAAAACAGAGAAGTAA
Protein Sequence: MYKNSKNTPNRTRNHCEICDKTIIGSSYKFKSHLFHHGAINSRFECPYCVKAFFRIDAYKRHVGSHNSVREKIKLKRYICDYCERSFADKRNLIYHFKVHDDSFHGRPDIGFKCEACGVSYCENRLLRYHIRREHFNLQVKEELHYKKTLNETWIEAVKDSKDYVKMTKVNNNTITIKKCVKQEYSINKAKLTDLSAMYLTKQYAKGTCDYCKKEMLKKSLRLHIREKHLNVRKFNCETCKRTFKRHYQLVDHECGKIRRRRKDRQATAEIKNIGKTEK

Sequence clustering based on sequence similarity using MMseqs2