Ebil034707.1
Basic Information
- Insect
- Epinotia bilunana
- Gene Symbol
- -
- Assembly
- GCA_947049265.1
- Location
- CAMRIQ010000534.1:388347-411274[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00022 0.018 16.6 0.2 1 23 409 431 409 431 0.98 2 13 0.22 18 7.2 2.1 1 23 438 460 438 460 0.95 3 13 0.22 18 7.1 1.8 1 23 464 486 464 486 0.97 4 13 0.00053 0.043 15.4 5.1 1 23 491 514 491 514 0.96 5 13 0.73 60 5.5 0.0 3 23 521 542 520 542 0.88 6 13 0.73 60 5.5 0.0 3 23 583 604 582 604 0.88 7 13 0.54 44 5.9 0.1 1 20 615 634 615 639 0.92 8 13 0.021 1.7 10.4 0.4 2 20 643 661 642 665 0.88 9 13 0.0082 0.67 11.6 0.8 3 23 672 693 672 693 0.98 10 13 0.027 2.2 10.0 0.0 1 23 720 742 720 742 0.97 11 13 2.3e-05 0.0018 19.7 1.1 1 23 748 770 748 770 0.98 12 13 0.00013 0.01 17.3 0.4 1 23 776 799 776 799 0.96 13 13 0.13 11 7.8 0.9 3 23 808 829 807 829 0.93
Sequence Information
- Coding Sequence
- ATGGATATAATATTGGATCAGTCCTCTGAGGACCTATTATGCTGTCGCGTGTGCCTCATGACCGATTGCAAGCTATTCAACATCCATGAATATAAGCTTGCCGATACGCTTTCTCGCATCACTGGGACCCCAATCTTCAAGGGCAGGCTCCCTCAGTACCTGTGTACGTACTGCCACACCCTGCTGCTGAAATGTGCCAAGTTCAGGACAACGTGTCTCCGGACCGAGCAGTGTCTGAAGAAGGAGGTGCTCAGGGGAGAGttgAACACAGATCGTATTCGCAGAATAGACCGTGGGACCAGTCGGCTCTTCCACCTGACTTTAACTGACGCCGAAATTGTAGACATACCACCTTCTGAGAAAACAAATGAACCTAATGTTGACATAGGTTCACCAAAGATAGAGCGGGTTTACAAAGCTGAACCAAGTACTATAAGCATAGATGATGACACTGATGATTATGAGACAAATTCTATTGATTTAGAAGCAAATATGCACACTTACAATGTTAAAGCAGTTAATTTAGACGATGAAGCAAGCATAAAAACTGATGAAGGTGAAGATATAGACGAACCAAATTCTGTAGAGATAGATGAAGCAAATACACACACTGTTAAGATAGATGCACCAAATATACAAACAGTGGGTGTTGTTAAACAAATTATAGATAAAAACATGCAAGAAAAGCGTTTCAATACAGTTAACATTGCCCCCATAAGGAAGCCTGAATTGAAAATGGAACTGGAAATGTTGAAAGGTCAACTTAACATCAAAGTCGTGAAGGATGCGAGAAATGTGAATACTATTCCAGCCTTGAAAAGGATGAGACCAGAAATGGAGGCTTCTAAAGTAAAGGTAAAAAAAGTCAGTACTGTAGCAAATAAATTGAAAACAGgtaaagaaaataatacaatGATGTTGCCAAGAATTATAAACACTAGTGAAGAGAAGGAAGTGCAAATTCAGATTATTAAAACTTCTCAAGACATTTTCAACAACCCGGGCATGTTGAATCCAGCTCTAGTGAGGAAATTGAATAGGGCGAGTGCCGTCAAACGAAAGAGGCTGTGGTTTCCCAAGGATCCAGCCAACAATTATTTGCAGGAGTTTGATTATTCCAAATTTGAGAGGGATCATGCAGTCAAAATTGTTACTTTGAGTAAGGAAGAGcagctggaagagatcgctgCGCGCAAGCAGTCCACCAATTACACCACGGCGCGGTTCCCGTGCCAGGACTGCGGGAAGGGCTTCGACATGGAGGCCGCCTTCAACAACCACCGCCAGCGGCACAGCCCTAGCGCGGGCGAGTACTTGTGCGACATCTGCTATGTGCGCTTCAACAAGCGCAGCCACCGCCAGGGCCACCTGGACATGCACCGGCTGAAGTTCAACTGCGAGCGCTGCCCCTTCGTCTCTAGATCTAAGCACCAGGCGAAGGCCCACTACGACATGCACGAGGGAAAGACCTTCAACTGCCCACACTGTGGGAAAACCTACAATAAGCACTCGACTTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTcatcggcgcgcgcggcgtctACGTGCACAAGCAACTCGTGCACAGGCACGCGCAGGTGCTGTACTCTATGTGTATATTGTACAGTGTCACACGTCTGTCTGTCAGCGACCAGTCGACTTGCTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTcatcggcgcgcgcggcgtctACGTGCACAAGCAACTCGTGCACAGGCACGCGCAGCTCATTAAACAGCAACAGTTCAAATGCACCGCCTGCTCAGCGACATTCGTCGGCGTGGACGCGCTGCAGACACACACGGACCTCGGTGACCACGAGGGCTGCCCGTGCGAGCAGTGCGGCGAGAGCTGTGCGAGCGAGGAGGCGCTGCGGGCGCACGCGGGAGCGAGACACGCGGCTGAGGCGCATTGGTGTGAGGAGTGTAACGCGACGTTCTCGAGCGCGGCGGCGTTCGACGTCCATCACCGACGCAAGCACCTCAACCAGCGTTACAGCGAGCCCCCGGGGCGGAGCCAGTACCAGTCCCTGAAGAAGCGCAGGCCGGTCCGCGGCCAGTTTATGTGCGAGCAGTGCGGACGCATATTGCCGTCCGCGGGCATACTGCGCGTGCACATGAACAACCACCTCGCCGTGAAGCCGTTCCCCTGCCCGCACTGCCCGAAGACCTTCGCCACCAACTACTGGAGAAACGAGCACGTGCGGAGACACACTGGAGAGAAGCCCTACCAGTGCGACCGCTGCCCGCGCGCCTTCGGGAGCAGGTCCAACATGATGCGCCACAACAAAGTGGTGCACCTAGGGCAGCACGACAACGCCATGTGCAccgcgtgcgcgcgcgtgtGCACGACGCGCGCCAGCCTGCGCGTGCACTTCCGCGCCGTGCACCTGCGCCAGGGCTGGCCCAAGAGACCGAACCGGAAGAAGCCGCCGCGAAAGCCATCGCCGGCACGCACACCCTCGCCGTCGGCCTCCTCCTAG
- Protein Sequence
- MDIILDQSSEDLLCCRVCLMTDCKLFNIHEYKLADTLSRITGTPIFKGRLPQYLCTYCHTLLLKCAKFRTTCLRTEQCLKKEVLRGELNTDRIRRIDRGTSRLFHLTLTDAEIVDIPPSEKTNEPNVDIGSPKIERVYKAEPSTISIDDDTDDYETNSIDLEANMHTYNVKAVNLDDEASIKTDEGEDIDEPNSVEIDEANTHTVKIDAPNIQTVGVVKQIIDKNMQEKRFNTVNIAPIRKPELKMELEMLKGQLNIKVVKDARNVNTIPALKRMRPEMEASKVKVKKVSTVANKLKTGKENNTMMLPRIINTSEEKEVQIQIIKTSQDIFNNPGMLNPALVRKLNRASAVKRKRLWFPKDPANNYLQEFDYSKFERDHAVKIVTLSKEEQLEEIAARKQSTNYTTARFPCQDCGKGFDMEAAFNNHRQRHSPSAGEYLCDICYVRFNKRSHRQGHLDMHRLKFNCERCPFVSRSKHQAKAHYDMHEGKTFNCPHCGKTYNKHSTYFSHVRNAHPAAHVACDLCGETFIGARGVYVHKQLVHRHAQVLYSMCILYSVTRLSVSDQSTCFSHVRNAHPAAHVACDLCGETFIGARGVYVHKQLVHRHAQLIKQQQFKCTACSATFVGVDALQTHTDLGDHEGCPCEQCGESCASEEALRAHAGARHAAEAHWCEECNATFSSAAAFDVHHRRKHLNQRYSEPPGRSQYQSLKKRRPVRGQFMCEQCGRILPSAGILRVHMNNHLAVKPFPCPHCPKTFATNYWRNEHVRRHTGEKPYQCDRCPRAFGSRSNMMRHNKVVHLGQHDNAMCTACARVCTTRASLRVHFRAVHLRQGWPKRPNRKKPPRKPSPARTPSPSASS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -