Ebil010369.1
Basic Information
- Insect
- Epinotia bilunana
- Gene Symbol
- -
- Assembly
- GCA_947049265.1
- Location
- CAMRIQ010000100.1:1295573-1306699[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4e-05 0.0033 18.9 0.6 1 23 57 79 57 79 0.98 2 10 4e-05 0.0033 18.9 0.6 1 23 163 185 163 185 0.98 3 10 4e-05 0.0033 18.9 0.6 1 23 269 291 269 291 0.98 4 10 4e-05 0.0033 18.9 0.6 1 23 375 397 375 397 0.98 5 10 4e-05 0.0033 18.9 0.6 1 23 481 503 481 503 0.98 6 10 4e-05 0.0033 18.9 0.6 1 23 587 609 587 609 0.98 7 10 4.6e-05 0.0037 18.7 4.6 1 23 615 637 615 637 0.98 8 10 6.8e-08 5.5e-06 27.6 0.6 1 23 643 665 643 665 0.99 9 10 6.8e-08 5.5e-06 27.6 0.6 1 23 679 701 679 701 0.99 10 10 5.4e-05 0.0044 18.5 1.0 1 23 707 729 707 729 0.98
Sequence Information
- Coding Sequence
- ATGAGAAAGTGCTTTATGATGACAACCAGACCTGACCAGTGGTACAGACCAGCGACCGACATGCACTTTTGGTGGAGGTGGAGTCTTCGGAGTTTGTTGGAGTTCTCGGAGTGTGAGATACTAAGTGAGCTCAACTCCCACACGACTACGCACACGGGCGAGCGAGCGTACACTTGCGAGCAGTGCGGCGCCACGTTCACGAAGCGCAGCTCGCTGGGGAAGCACGCGCTGCGGCATCGCGGGATCAAGCCGCACCAGTGCGACGCGTGCCCCATGAAGTCAGCTCCACTCCCACACCACTACGCACACGGGCGAGCGAGCGTACACTTGCGAGCAGTGCGGCGCCACGTTCACGAAGCGCAGCTCGCTGGGGAAGCACGCGCTGCGGCATCGCGGGATCAAGCCGCACCAGTGCGACGCGTGCCCCATGAAGTAAGTAACTTCCAGCTCCACTCCCACACCACTACGCACACGGGCGAGCGAGCGTACACTTGCGAGCAGTGCGGCGCCACGTTCACGAAGCGCAGCTCGCTGGGGAAGCACGCGCTGCGGCATCGCGGGATCAAGCCGCACCAGTGCGACGCGTGCCCCATGAAGTCAGCTCCACTCCCACACCACTACGCACACGGGCGAGCGAGCGTACACTTGCGAGCAGTGCGGCGCCACGTTCACGAAGCGCAGCTCGCTGGGGAAGCACGCGCTGCGGCATCGCGGGATCAAGCCGCACCAGTGCGACGCGTGCCCCATGAAGTAAGTAACTTCCAGCTCCACTCCCACACCACTACGCACACGGGCGAGCGAGCGTACACTTGCGAGCAGTGCGGCGCCACGTTCACGAAGCGCAGCTCGCTGGGGAAGCACGCGCTGCGGCATCGCGGGATCAAGCCGCACCAGTGCGACGCGTGCCCCATGAAGTCAGCTCCACTCCCACACCACTACGCACACGGGCGAGCGAGCGTACACTTGCGAGCAGTGCGGCGCCACGTTCACGAAGCGCAGCTCGCTGGGGAAGCACGCGCTGCGGCATCGCGGGATCAAGCCGCACCAGTGCGACGCGTGCCCCATGAAGTAAGTAACTTCCAGCTCCACTCCCACACCACTACGCACACGGGCGAGCGAGCGTACACTTGCGAGCAGTGCGGCGCCACGTTCACGAAGCGCAGCTCGCTGGGGAAGCACGCGCTGCGGCATCGCGGGATCAAGCCGCACCAGTGCGACGCGTGCCCCATGAAGTCAGCTCCACTCCCACACCACTACGCACACGGGCGAGCGAGCGTACACTTGCGAGCAGTGCGGCGCCACGTTCACGAAGCGCAGCTCGCTGGGGAAGCACGCGCTGCGGCATCGCGGGATCAAGCCGCACCAGTGCGACGCGTGCCCCATGAAGTAAGTAACTTCCAGCTCCACTCCCACACCACTACGCACACGGGCGAGCGAGCGTACACTTGCGAGCAGTGCGGCGCCACGTTCACGAAGCGCAGCTCGCTGGGGAAGCACGCGCTGCGGCATCGCGGGATCAAGCCGCACCAGTGCGACGCGTGCCCCATGAAGTCAGCTCCACTCCCACACCACTACGCACACGGGCGAGCGAGCGTACACTTGCGAGCAGTGCGGCGCCACGTTCACGAAGCGCAGCTCGCTGGGGAAGCACGCGCTGCGGCATCGCGGGATCAAGCCGCACCAGTGCGACGCGTGCCCCATGAAGTAAGTAACTTCCAGCTCCACTCCCACACCACTACGCACACGGGCGAGCGAGCGTACACTTGCGAGCAGTGCGGCGCCACGTTCACGAAGCGCAGCTCGCTGGGGAAGCACGCGCTGCGGCATCGCGGGATCAAGCCGCACCAGTGCGACGCGTGCCCCATGAAGTTCACAAGCAAGGACCACTTGAAGCGGCACTACCGCATCCACACCGGGGAGAAGCCGTACCGCTGCCCGCAGTGTGACCGCGCCTTTACGCAGAGCAATGATCTCGCCAAGCATCTGCGCACGCATCTTGGCAATATGCTTTACAACCACACCGGGGAGAAGCCTTACCGCTGCCCGCAGTGTGACCGCGCCTTTACGCAGAGCAATGATCTCGCCAAGCATCTGCGCACGCATCTTGGCAATATGCTTTACAAATGCGCCCAATGCTCCGAGAGTTTCCGTTTAAAGAGTGAGCTACAGCAACACATATCACAACACTTCGCGTCACAAATGGCCTCCGCAGCGAGTGCCCTAGAACCGAAGGACAAACATGACTCATCAATGAATGTAGATTATGAATGCGGCGAAATGTGA
- Protein Sequence
- MRKCFMMTTRPDQWYRPATDMHFWWRWSLRSLLEFSECEILSELNSHTTTHTGERAYTCEQCGATFTKRSSLGKHALRHRGIKPHQCDACPMKSAPLPHHYAHGRASVHLRAVRRHVHEAQLAGEARAAASRDQAAPVRRVPHEVSNFQLHSHTTTHTGERAYTCEQCGATFTKRSSLGKHALRHRGIKPHQCDACPMKSAPLPHHYAHGRASVHLRAVRRHVHEAQLAGEARAAASRDQAAPVRRVPHEVSNFQLHSHTTTHTGERAYTCEQCGATFTKRSSLGKHALRHRGIKPHQCDACPMKSAPLPHHYAHGRASVHLRAVRRHVHEAQLAGEARAAASRDQAAPVRRVPHEVSNFQLHSHTTTHTGERAYTCEQCGATFTKRSSLGKHALRHRGIKPHQCDACPMKSAPLPHHYAHGRASVHLRAVRRHVHEAQLAGEARAAASRDQAAPVRRVPHEVSNFQLHSHTTTHTGERAYTCEQCGATFTKRSSLGKHALRHRGIKPHQCDACPMKSAPLPHHYAHGRASVHLRAVRRHVHEAQLAGEARAAASRDQAAPVRRVPHEVSNFQLHSHTTTHTGERAYTCEQCGATFTKRSSLGKHALRHRGIKPHQCDACPMKFTSKDHLKRHYRIHTGEKPYRCPQCDRAFTQSNDLAKHLRTHLGNMLYNHTGEKPYRCPQCDRAFTQSNDLAKHLRTHLGNMLYKCAQCSESFRLKSELQQHISQHFASQMASAASALEPKDKHDSSMNVDYECGEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -