Ebil034677.1
Basic Information
- Insect
- Epinotia bilunana
- Gene Symbol
- -
- Assembly
- GCA_947049265.1
- Location
- CAMRIQ010000534.1:156740-179716[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.73 59 5.5 5.6 1 23 273 296 273 296 0.98 2 11 0.0011 0.092 14.3 0.4 2 23 304 325 304 325 0.95 3 11 1.4 1.1e+02 4.6 0.9 1 20 329 348 329 351 0.85 4 11 9.6e-05 0.0078 17.7 2.7 1 23 356 379 356 379 0.96 5 11 0.00045 0.036 15.6 0.1 2 23 388 410 388 410 0.94 6 11 0.54 44 5.9 0.1 3 23 449 470 448 470 0.92 7 11 3.9e-05 0.0032 19.0 0.7 1 23 475 498 475 498 0.95 8 11 5.5e-05 0.0045 18.5 0.1 3 23 527 547 526 547 0.98 9 11 0.00089 0.072 14.7 0.1 1 23 553 575 553 575 0.95 10 11 0.048 3.9 9.2 1.8 2 23 582 603 581 603 0.95 11 11 4.6e-06 0.00037 21.9 0.4 1 23 609 632 609 632 0.96
Sequence Information
- Coding Sequence
- ATGTCCGCAGTGAAATCGGAAGCGGCGGAAGAGCTGCGTGCGTGTAGGATTTGTCTCGCTACGGACACGAGGCTGTTCGGCATTCATGAACAGCGGTTAGATGAGGCTTTTACCGATATTATTGGCATTACGCTGTCAGTATGGGACGGCTGCCCTGTGCATGTGTGCGTGTGGTGCCGCGCGCAGCTCGTCAGCGCGCagtcgctgcgcgcgcgcgccgctcgcgccgaCGCGCTGCTCAAGGAAGCACTCATGCAGGAACACATTATAACAGCAAGCTACCTCGCAACCATAGACCGGGTGTCGCACCAACTAGCgttctgtctgtccgtccacCACCCCGCCACCATAGAGGCGACACACGACGAAACTAAACAGGAGGTGGACTATGATGACGATTTTGATTTGTACCATCCAGagtTTGATGAACCGATAATCAATTTAAAGAACAGTATGATGCTGGAAAGCCTGAAGAGTATGGAAGTCGAGCTGGACGTAAAGACCGATGTGAGCGAGATGGCGATAAAAGAAGAGGAGCCCGTGAAGAAGCGGAAAGAGAGGGGGGGAGGGGAAAGGATAAAGGTGAAAAAGAACAAAAGCGTGAAAACGAAGAAGAGAGTCCAGAAGGAGGCAGAAGAGAAGGAGCCGAAGAAGTACAAGCGGAAGCTGAAGGGGTTCAAGAAGTTCTTCGCCAGTGAGGACGACTATTTGAAGTTTGAGAACACTTACAACATTGAGGTAGTGAAGCTGACAGAAGAGGAGCAGCAGAAGGAGCTAGAGGCGCGCAAAGAGTCGAGCAACTACCTGCGCTCCGCGTACCGCTGCGAGCGGTGCTTCAAGGGGTTCCTGTCGCACACGACCTTCGAGAACCACCAGAAGAAGACCCACGATCCGAGTAACGGGCGCAACGAGTGcgcgctgtgcggcgcgcgcttcCGGCACCCGGCGGGGCTGCGCAAGCACTTCGAGTCGCACACGCTCAAGTTCATCTGCAAGATCTGCCAGTTCATGACGCGCCACCGGAGCATGGCTGTTATGCACGCAGATTTTCATTCGGGGAAGACTTTTGATTGCAAGTACTGTGGACTCACTTTCAACAAACAGACGACATTCAACACGCACACCCGCGTCCAGCATCCTCTCGAAAACGCTTCCGCCGGCACCTGTGACGTCTGCGGCGAGACCTTCACGGGGAAACGAGGCCTACAGCAGCACAAGGCCATTGCGCATAAAAAGCTGACGACGCCGGAGCTGAAGTGTCGCTCGTGCCTCGTGCAATTCGAGAATGTCGACGCGAAAACACGGCACAAGATCGACAACATCTGCGACCCCAAACTAAGGCCATGCCCGGCGTGCGGCGACCGGTTCACGGACGAGGAGACAGCCAAGAAGCATTACCAGGACAACCACGGGAAGGAACATTACAAATGCGACCAGTGCGATACAACCTTCGCGAAGAAATCGTCCCTGGCCGTGCACTTCGAGCGCGTGCACCTCAAGATCAAGCCGAAGAAGCCCGCCTTCTACAAGTACCACCAGTACGGGAAGGGCAGAATGAAGATACGGAACGCGGAGATTTGCGAGATCTGCGGCAAGGGATACCCGGACACGACGTGGCTGCGGTATCACCAGCGCACGCACACGGGCGAGCGGCCGTACGCGTGCTCGCAGTGCAGCAAGAGATACATGACGCCCGCCGGCCTGCAGCGTCACGTGGTGATCCACACGGGGGTGCGCCGCTGGCAGTGCTCGCAGTGCCCCAAGACCTTCCTGCATCAGTCTTCCATCTACACGCACAAACTGGTCCACACAGGCGAGAAGCCGTACGTCTGTCAGATCTGCAGCAAAGCGTTCACGCAATCAGGCTCGCTGCAGACACACGTCAAATACGTGCATATGAAGTTGAAGCCGCCACCAAGACGCAGGCGGCAGGAGCTGTATAAGCCACCCAGCTGA
- Protein Sequence
- MSAVKSEAAEELRACRICLATDTRLFGIHEQRLDEAFTDIIGITLSVWDGCPVHVCVWCRAQLVSAQSLRARAARADALLKEALMQEHIITASYLATIDRVSHQLAFCLSVHHPATIEATHDETKQEVDYDDDFDLYHPEFDEPIINLKNSMMLESLKSMEVELDVKTDVSEMAIKEEEPVKKRKERGGGERIKVKKNKSVKTKKRVQKEAEEKEPKKYKRKLKGFKKFFASEDDYLKFENTYNIEVVKLTEEEQQKELEARKESSNYLRSAYRCERCFKGFLSHTTFENHQKKTHDPSNGRNECALCGARFRHPAGLRKHFESHTLKFICKICQFMTRHRSMAVMHADFHSGKTFDCKYCGLTFNKQTTFNTHTRVQHPLENASAGTCDVCGETFTGKRGLQQHKAIAHKKLTTPELKCRSCLVQFENVDAKTRHKIDNICDPKLRPCPACGDRFTDEETAKKHYQDNHGKEHYKCDQCDTTFAKKSSLAVHFERVHLKIKPKKPAFYKYHQYGKGRMKIRNAEICEICGKGYPDTTWLRYHQRTHTGERPYACSQCSKRYMTPAGLQRHVVIHTGVRRWQCSQCPKTFLHQSSIYTHKLVHTGEKPYVCQICSKAFTQSGSLQTHVKYVHMKLKPPPRRRRQELYKPPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072862;
- 90% Identity
- iTF_01072862;
- 80% Identity
- -