Ebil034662.1
Basic Information
- Insect
- Epinotia bilunana
- Gene Symbol
- -
- Assembly
- GCA_947049265.1
- Location
- CAMRIQ010000534.1:51133-65176[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0022 0.18 13.4 4.1 1 23 20 43 20 43 0.97 2 23 0.0067 0.55 11.9 0.4 3 23 50 71 49 71 0.95 3 23 0.002 0.16 13.6 0.2 2 23 84 106 83 106 0.95 4 23 0.0019 0.15 13.7 0.1 1 23 125 147 125 147 0.97 5 23 0.073 5.9 8.7 0.9 2 21 154 175 153 176 0.91 6 23 0.11 9 8.1 0.5 3 21 190 210 189 211 0.90 7 23 0.11 9 8.1 0.5 3 21 225 245 224 246 0.90 8 23 0.11 9 8.1 0.5 3 21 260 280 259 281 0.90 9 23 0.11 9 8.1 0.5 3 21 295 315 294 316 0.90 10 23 0.11 9 8.1 0.5 3 21 330 350 329 351 0.90 11 23 0.11 9 8.1 0.5 3 21 365 385 364 386 0.90 12 23 0.11 9 8.1 0.5 3 21 400 420 399 421 0.90 13 23 0.11 9 8.1 0.5 3 21 435 455 434 456 0.90 14 23 0.11 9 8.1 0.5 3 21 470 490 469 491 0.90 15 23 0.11 9 8.1 0.5 3 21 505 525 504 526 0.90 16 23 0.11 9 8.1 0.5 3 21 540 560 539 561 0.90 17 23 0.11 9 8.1 0.5 3 21 575 595 574 596 0.90 18 23 0.11 9 8.1 0.5 3 21 610 630 609 631 0.90 19 23 0.11 9 8.1 0.5 3 21 645 665 644 666 0.90 20 23 0.11 9 8.1 0.5 3 21 680 700 679 701 0.90 21 23 0.11 9 8.1 0.5 3 21 715 735 714 736 0.90 22 23 0.026 2.1 10.1 1.5 3 23 750 773 749 773 0.92 23 23 0.013 1.1 11.0 0.0 2 23 781 803 780 803 0.96
Sequence Information
- Coding Sequence
- atgcagattttgagATTTATAGCCAAGAACCACTATCTGTCTCACTCGGGCACCACCCACCAGTGCCCGCACTGCGACGCTGCCTTCACCAAATACACATCGTATCTGACGCACGTGCGGCGCCGGCACCCCGCCATGAATGTGGCATGCGACGAGTGCGGCGAGACGTTCGTGGGCGAGAACGGGCTGCGGCACCACAAGACGAGGGTACACAGGAACACGCTCCTGAATCCCCGTGCGACGGGCACCCCGTGCCGCGACTGCGACCAGACCTTCGTCGACCAAGCATCGTACGACACGCACTACCAACGCATACACCTCAACATCCGCATGAAGGAGCCACCTCGGTCGCGGGCGCGGAGTACTAGGGCGTTCATCTGTGAACTGTGCGGGGCTGAGTGCTCGTCAGGATCTAGCCTAGCGGCGCACCAGCGAGcgcacggcggcgcgcggccgcacGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGAGTATAACCATAGAGCCTTGGTCACACAGTGACGCGTGCCCGGCGGCGAGCTGTGCGCGGCGCTTCGCCACGCTGCACAACATGCGGCGCCACCACCGCGTCGTGCACCTGGGTACCCGGCCGGCGGTCCCGTGCGGCGTGTGCGGCAAGCTGCTGGCGCACGCGGCGTCGCTCAAGCTGCACGTCAACACCGTGCACCTCAagctgcccgcgccgcgccggcgacgCGACAAGCGCACTGCCAGACACGACTCTTAA
- Protein Sequence
- MQILRFIAKNHYLSHSGTTHQCPHCDAAFTKYTSYLTHVRRRHPAMNVACDECGETFVGENGLRHHKTRVHRNTLLNPRATGTPCRDCDQTFVDQASYDTHYQRIHLNIRMKEPPRSRARSTRAFICELCGAECSSGSSLAAHQRAHGGARPHACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVSITIEPWSHSDACPAASCARRFATLHNMRRHHRVVHLGTRPAVPCGVCGKLLAHAASLKLHVNTVHLKLPAPRRRRDKRTARHDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -