Ebil022463.1
Basic Information
- Insect
- Epinotia bilunana
- Gene Symbol
- -
- Assembly
- GCA_947049265.1
- Location
- CAMRIQ010000253.1:739323-740441[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.4e-05 0.0035 18.8 0.5 1 23 25 47 25 47 0.98 2 12 0.03 2.5 9.8 2.2 1 23 52 74 52 74 0.98 3 12 0.0012 0.097 14.3 0.2 1 23 82 104 82 104 0.94 4 12 3.4 2.8e+02 3.4 0.1 2 23 111 132 110 132 0.90 5 12 4.3e-05 0.0035 18.8 2.6 1 23 137 159 137 159 0.97 6 12 6.2e-06 0.0005 21.5 1.3 1 23 164 186 164 186 0.96 7 12 4.8e-06 0.00039 21.8 2.3 2 23 192 213 191 213 0.97 8 12 8.9e-05 0.0072 17.8 4.9 1 23 219 241 219 241 0.97 9 12 0.00029 0.024 16.2 1.1 1 23 249 272 249 272 0.94 10 12 0.00073 0.059 15.0 1.9 1 23 278 300 278 300 0.97 11 12 8.7e-06 0.0007 21.0 2.7 1 23 306 328 306 328 0.99 12 12 5.8e-07 4.7e-05 24.7 1.3 1 23 334 357 334 357 0.93
Sequence Information
- Coding Sequence
- ATGTCCATCAAATCGGTTTACTTTTCAGAAACCACAGCTACACCGTCGGAGCATTCAGAAGCAACCAGCCAATTCCCGTGCCACATATGCGGTGCCAACTTCAATAACTTATCCGAAGTCACCCTCCATCTCAACAAGCATGTCCGGAAAACTTTCCCATGTCCGCGCTGTAGCTgcttattcaatttcaaatcgGACTATGACAACCACCAACTCGTACACAGTACTGACCCGGAGTCCCTGCACAACTGCAACGTTTGCGGAGAAAAGTATGCTACAATGGAACTGCTGGAGGCACATCGAGCCGAGCATAAAGAGAAAGACGGCATCCCCTGCTACATCTGTGGTTCGAAGCTTAAAACTATGGTTATTTTGAAGCGCCACGTCGCTAACCATTTCACTGAGCCGTATTATTGTGAGGAGTGCGGTAAAGAGTTTCCATCCCAATGGTGCTATAAGCAGCACATAAAGTTTCATTCTGGCGATACTTTCCCTTGTTCTTTCTGTGGCAAGCAATTTTCTACTTTAAGCAAGCTAAAGACCCATCTAGTCTCACACAGTGAGAAACAACAGGAATGTAACATTTGCCATAAACGTTTCTCAAGGGAGCAAGGCTTGAAAGTTCATATGAAGCTGCATACTGGTCAGAAGAATTTCATCTGCACTACATGCCAAAAAACATTCTGCACGAGCTTTGAGCTGAAATCTCACAGCAGAGTGCATGACAAAGACAAGCTGAAACCGTTTAAGTGTTCCGAGTGTGAATCGACATTTGTTTCAAACGGCCAACTGAAGAGCCACTACGTTTCTAAGCATAGTACAGAAACCCCGTTTTCTTGTGAAGCTTGTAATGTTAAGTTTAAGAGTAAAAAGACCTGGAAAAATCACATGATGCAACATTCGGAGGAGAAACCATATAAGTGCAACATATGCAGTAAAAGTTTTTCAATGAAGTATATTCTAAGCAAGCACATGAGATCTCATACTGATGAGCGGCCTTACCCTTGTCAGTATTGTGAGAAAAGGTTTAGGTATTGGTCGAATCTGAGGGTTCATATGGGCTATTTTCATAAAGACAAGATAGTTAAGAAAGCTCAGAACGATGACGAAATTGTGTGA
- Protein Sequence
- MSIKSVYFSETTATPSEHSEATSQFPCHICGANFNNLSEVTLHLNKHVRKTFPCPRCSCLFNFKSDYDNHQLVHSTDPESLHNCNVCGEKYATMELLEAHRAEHKEKDGIPCYICGSKLKTMVILKRHVANHFTEPYYCEECGKEFPSQWCYKQHIKFHSGDTFPCSFCGKQFSTLSKLKTHLVSHSEKQQECNICHKRFSREQGLKVHMKLHTGQKNFICTTCQKTFCTSFELKSHSRVHDKDKLKPFKCSECESTFVSNGQLKSHYVSKHSTETPFSCEACNVKFKSKKTWKNHMMQHSEEKPYKCNICSKSFSMKYILSKHMRSHTDERPYPCQYCEKRFRYWSNLRVHMGYFHKDKIVKKAQNDDEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00660534;
- 90% Identity
- iTF_00660534;
- 80% Identity
- -