Ebil028447.1
Basic Information
- Insect
- Epinotia bilunana
- Gene Symbol
- -
- Assembly
- GCA_947049265.1
- Location
- CAMRIQ010000350.1:305232-313768[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0061 0.49 12.1 3.1 1 23 33 56 33 56 0.95 2 18 5.3e-05 0.0043 18.5 1.1 2 23 92 114 92 114 0.97 3 18 0.0011 0.089 14.4 2.7 1 23 120 142 120 142 0.97 4 18 0.0018 0.14 13.7 3.1 1 23 183 206 183 206 0.95 5 18 0.00029 0.024 16.2 2.4 2 23 242 264 242 264 0.93 6 18 0.0008 0.065 14.8 1.7 1 23 270 292 270 292 0.96 7 18 0.002 0.16 13.6 5.7 1 23 298 320 298 320 0.99 8 18 5.5e-05 0.0044 18.5 2.8 1 23 326 349 326 349 0.97 9 18 0.00019 0.015 16.8 2.3 1 23 430 453 430 453 0.95 10 18 0.0032 0.26 12.9 0.6 2 23 489 511 489 511 0.96 11 18 0.1 8.2 8.2 0.5 1 13 517 529 517 531 0.90 12 18 2.8 2.3e+02 3.7 4.3 1 23 550 573 550 573 0.94 13 18 0.0096 0.78 11.4 1.8 1 20 635 654 635 658 0.92 14 18 0.00035 0.028 16.0 1.4 1 23 719 742 719 742 0.92 15 18 7.6e-05 0.0062 18.0 0.2 2 23 778 800 778 800 0.96 16 18 0.0009 0.073 14.7 0.6 1 23 806 828 806 828 0.96 17 18 9e-05 0.0073 17.8 0.4 1 23 834 856 834 856 0.99 18 18 2.6e-05 0.0021 19.5 1.6 1 23 862 885 862 885 0.96
Sequence Information
- Coding Sequence
- ATGGCATCGTCACAAAATCTTCATTCTTTTCTAGGGAAGGCCGGAAGCGAATGCTATTCCTTCTGCACCGTCAACGGAGAAGCCGGATCGGAGATGTACACGTGCCAGGTTTGCGAGAGGAGTTTCAAGAAAAGGCGGTTTTTCAGAGATCACTATCTCAACGTTCACTTAAAGCTGAGGAAGAAGACACATGCTTGTGTCCTATGCAACGAGCAGCTGCTGCCCTGGCTAAGGGCCAAGCACATGGAAGAAGCTCATGGCTGGGGAGCGCCAACATGCGAAATGTGTGGGAAAAAGTTTCCCTTCCAAAACAAATTAATATGGCATCAAAAGACTTTCCATTTGGGCGAAAGGAGTTTTCAATGCGACCAGTGTGACATGGCTTTTCCCAGCCGTCATGGCCTGAAAGCGCACTCCCACAAGCATTCCGCTGACAAGAAATTTAAATGCACAATCTGCTCGAATGCGTTTCAGTTTCCGCGAGGGAAGGCCGGAAGCGAATATTTTTCGTTCTGCACCGTCAACGGAGAAGCCGGATCGGAGACGTACACGTGCAAGGTTTGCGAAAAGACTTTCAAGAAAAGGCAGTATTTCAGAGGTCATTATCTCAACGTTCACCTAAAGCTGAGGAAGAAGACACATGCTTGTCTCATATGCAAAGCCGAGCTGTTGGACGGGGAAAGGACCAAGCACATGGAAGATGCTCACGGCCGGGAGGCCCCTACATGCGGAGCATGCGGGAAAAAGTTTAACTATCAACACTCATTAAGAAAGCATATAAAGGCTTTCCATTTGGGcgaaaagaattataaatgtgATAAGTGTGTCATGGCTTTTCCTACCCGCACACAACTAACGCGGCATTCTTACAAGCATTCCGCTGTTAAGGACTTTAAATGCGAGTTCTGTGCGCATACGTTCAAATTTCCGCATACTTTGAAAGAACACATGAAGATACATCTGAATGTTAGGAGATATGTTTGCAAAATTTGCGGTGAAACGTTTGTGCAGTGCGCCAGTTTCAAGTACCATATGTCAAAAAGACATCCCAACGAATATAATATAGCAATCGCAGAGCGATGGAAAAGATTCATAGAATTATTTTGCTACGGTGATGAATTGACTGAAAGAAACATAGAACATGAGATCGAAATAGAACCAGACTACCTTGGTCTAACACTCATGAGGGAAGAATTTGACGTTGCTATAGGAAATATACAAAATGGGAAGGCCGGAAGCGAATACTTTTCGTTCTGCACCGTCAACGAAGAAGCCGGGTCGGAGATATACACGTGCCAGGTTTGCGACAAGAGTTTCAAGAAAAGGCAGCTTTTCAGAGATCACTATCTCAACGTTCACCTAAAGCTGAAGAAAAAGACACATGCTTGTGTCATATGCAATGATCAGCTGCTGCCCTATCAAAGGGCTAAACACATGGAAGAAACTCACGGCTGGGAAGCACCAACATGTGGAGCTTGTGGGAAAAAGTTTCCCTACCAAAACAGATTAATATTGCATCAAAAGACTTTCCATTTGGGAGAAAGAAATTTTCGATGCGACCAGTGTGATAAGGCTTTCCCCAGCCGGAAGGCCGGAAGCGAATACTTTTCGTTCTGCACCGTCAACGGAGAAGCCGGGTCGGAGACGTACACGTGCAGGGTTTGCATTACGACTTTCAAGAAAAGGCAGCTTTTCAGAGAACATTACCACAACGTCCACCTAAAGCTGAGGAAAAAGACACATGCTTGTGTCTTATGCAAGGAGCAGCTGCTGCCTTGGCAAAGGGCCAAGCACATGGAAGAAGCTCACGGCTGGGAAGCGCCAACATGCGGAGAGTGTGGGAAGGCCGGAAGCGAATACTTTTCGCTCTGCACCGTCAACGGAGAAGCCGGATCGGAGACGTACACGTGCAAGGCTTGCGAGAAGACTTACAAGAAATGGAAGTCTTTCAAAGTTCACTATCCGACCGTTCATCTAAAGGTGGGGAAGAGGACACGTGCTTGTCCCATATGCAAAGAAGAGGTGTTCCCCTGGCTAAAGGCCAAGCACTTGGAAGAAGCCCACGGTCAAACAGCCCCTACATGCGGAGCATGGAAGGCCGGAAGCCCCGCCTTTGCGTTCTGCACCATCAACAAAGAAGCCGGATCGGAGACCTACACATGCAAGGTTTGCGACAGGACTTACAAGAATTGGACGTTGTACAAAGATCACTATGTGTACGTTCATCTAAAGCAGCGGAAGAAGACACATCCTTGTGTATTGTGCAAAGAACAGCTGATTCCTTGGATGAGGGCGAAGCACATGGAAGAAGCTCACGGCTGGGAGGCACCCACTTGCGAAGCGTGTGGAAAAAAGTTCCCCTACCAAAACGCACTACTAAGGCATCAAAGAGTCATCCATATGGGCGAAAAGAATTTTAAATGCGACGTGTGTGACATGGCCTTCGCCAACAATCAACGCTTAATCCGGCACTCTTATAAACATTCGAATGTTAAGCAATTCAAATGCATGATCTGTTCAAGAGCATTGAAGACTCCTAAGTCTTTGAGTGCACACATGAAAATACATTTGAATGACCGGAGACATGTCTGCAAAATTTGTGAGGAGGCGTTTGTGCAGAGTTCCAGTTTGAAGTACCATATGTCGAGGAAACATCCCAATGAGTAG
- Protein Sequence
- MASSQNLHSFLGKAGSECYSFCTVNGEAGSEMYTCQVCERSFKKRRFFRDHYLNVHLKLRKKTHACVLCNEQLLPWLRAKHMEEAHGWGAPTCEMCGKKFPFQNKLIWHQKTFHLGERSFQCDQCDMAFPSRHGLKAHSHKHSADKKFKCTICSNAFQFPRGKAGSEYFSFCTVNGEAGSETYTCKVCEKTFKKRQYFRGHYLNVHLKLRKKTHACLICKAELLDGERTKHMEDAHGREAPTCGACGKKFNYQHSLRKHIKAFHLGEKNYKCDKCVMAFPTRTQLTRHSYKHSAVKDFKCEFCAHTFKFPHTLKEHMKIHLNVRRYVCKICGETFVQCASFKYHMSKRHPNEYNIAIAERWKRFIELFCYGDELTERNIEHEIEIEPDYLGLTLMREEFDVAIGNIQNGKAGSEYFSFCTVNEEAGSEIYTCQVCDKSFKKRQLFRDHYLNVHLKLKKKTHACVICNDQLLPYQRAKHMEETHGWEAPTCGACGKKFPYQNRLILHQKTFHLGERNFRCDQCDKAFPSRKAGSEYFSFCTVNGEAGSETYTCRVCITTFKKRQLFREHYHNVHLKLRKKTHACVLCKEQLLPWQRAKHMEEAHGWEAPTCGECGKAGSEYFSLCTVNGEAGSETYTCKACEKTYKKWKSFKVHYPTVHLKVGKRTRACPICKEEVFPWLKAKHLEEAHGQTAPTCGAWKAGSPAFAFCTINKEAGSETYTCKVCDRTYKNWTLYKDHYVYVHLKQRKKTHPCVLCKEQLIPWMRAKHMEEAHGWEAPTCEACGKKFPYQNALLRHQRVIHMGEKNFKCDVCDMAFANNQRLIRHSYKHSNVKQFKCMICSRALKTPKSLSAHMKIHLNDRRHVCKICEEAFVQSSSLKYHMSRKHPNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -