Ebil016509.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia bilunana
Gene Symbol
-
Assembly
GCA_947049265.1
Location
CAMRIQ010000169.1:129186-144652[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.087 7.1 8.4 1.4 1 23 168 190 168 190 0.96
2 18 0.0058 0.47 12.1 0.1 3 19 199 215 197 217 0.90
3 18 3.8e-05 0.0031 19.0 1.4 2 23 229 250 228 250 0.97
4 18 0.0048 0.39 12.4 0.6 3 23 258 278 257 278 0.97
5 18 0.07 5.7 8.7 6.2 1 23 286 309 286 309 0.87
6 18 1.9e-07 1.5e-05 26.2 2.3 1 23 314 336 314 336 0.98
7 18 0.00029 0.024 16.2 1.5 1 23 343 365 343 365 0.98
8 18 0.00011 0.0089 17.5 2.9 3 23 373 393 371 393 0.98
9 18 1.5e-05 0.0012 20.3 3.5 1 23 399 421 399 421 0.98
10 18 0.00043 0.035 15.7 1.2 1 23 526 548 526 548 0.98
11 18 3.5e-05 0.0029 19.1 3.0 2 23 556 578 555 578 0.96
12 18 4.5e-05 0.0036 18.8 2.1 2 23 587 608 586 608 0.97
13 18 2e-06 0.00017 23.0 1.1 2 23 615 636 615 636 0.97
14 18 0.0015 0.13 13.9 3.1 1 23 643 666 643 666 0.96
15 18 2.5e-06 0.00021 22.7 0.1 1 23 671 693 671 693 0.97
16 18 3.1e-05 0.0025 19.3 0.7 1 23 700 722 700 722 0.99
17 18 0.00012 0.0098 17.4 2.3 1 23 728 750 728 750 0.98
18 18 1.1e-05 0.0009 20.7 0.9 1 23 756 778 756 778 0.99

Sequence Information

Coding Sequence
ATGGATAAATGGACTAATAGCTGCCGTGCGTGTTTGTCTACATCGGAATCGTTTACGTACTTCTTGCATGAAAATATATCTCCCGAAGAGTATTGGTTTTGTACTTCTCTTGagGTGAAGGAAGATGCCCTCCCGAAATCGCTTTGCAACGTTTGTTATGGATTACTCACACAATTTACAGAATTTAAAAAACTATGCATACAGTCAGAAAATATATtgtgtaatattttaaagagcTTGGAGGCTGAAAACAAAAACTGTCTGAATTTAAAATCAGAACTTGGGGATAATGTATTTGAAGAAAATCTTGATAACAATACAGTGGTGAAAATTGAACATTTGGCTGATATTGATGTCTTAGATACAAATGTGTGTGATGATATTTACGAAGAAGAAGGCACAACGGTCTACAATCCCATCATAAAGGTGCACAATTCACCAACTGGGAAGAAATATGCAAAACCTGTGTCAAAGTTGAAGAAGACCAGGCGAAAGTTCCAATTTACCTGTGAATTGTGTTACAAAAAGTTTGGCTACAGAGAACGCTACGAAGCACACAAGTTGGAGCATGAGGGAAAAACTACTGCAATATACTGCGCACCATGCAACAAGACCTTTTCTACCTGGGGCGGGCTGAAGCGGCACAACGACTGCGAGCACACGCGGCTGACGCTCGACCAGCTCACCTGCAAACTGTGCTCCAAGgtGTTCAAAAGCCCGCGAACGCTGAATATACACCGCAGCACCCACGGAGAAAGGAAACTGAGGATATGCGACGTCTGCGGGAAGGGATGCAAAAGTGATCTGACTTTGAAGGCTCACCTAGAAACGCACATAGAAAACCGCGAGCGCCGCTACACCTGCCCACACTGCGGCAAGAAGTTCTTCAGCAAGAAGACGTGCGCCTCCCACGCGTCCCGCCGGCACAGCGACCGTCGATACATCTGCCACCACTGCGATTACCCCTTCACCGATAAGAGCAACCTTGCCAAACACATCATGATACACGAAGGCAAACAGCCGCTGCACAAATGTGACCTCTGCCTTAAGACTTTCGCAGCCCAATCCTCCCTAGTCATACACAAGAGAACACACACTGGAGAAAAACCGTTCGGATGCAGTTACTGCTCGAAAAGTTTTTCGAATAAGCGGATGTTGGTGGACCATCACAGGATACATACGGGGGAGAAACCGCATAAGTGCACGGTGTGTGAGCAGAGCTTTACGCAGCGGGGGACCATGAAGCGGCATATGAAGGTGCATGATAGAATATGCGCGCTAATAAAAGACGAACCCAGTTCAGACGTCAATGTTAATGAAATGGAAGAGAAAGATACATGTGAGAAGAGTGAACATGAGAATGGAACAGAATCATGTTCCTTGTTACAAATTAAAGTGGACGCAGCTAAAGAGGATGTAGCGGAAGAAGTATTAAGTGATATTAATGATGTCACTGATTCagATGCCCCAGAAACAGATTTGGGAGGAGAGGACTTTGAAGACCATATTGAGGCAACGAAAGTGAGCGCAACCAAAGTAGCAAATCCAACAGCAAGAAGCATCCTACCTAAAAACTTCAAGTGTGACCTATGCAATAGAAAGTTTGCCTTCAAGGAACGTTTGGAGGGCCACATGTTGAGACATGTGGGGAAAACAGGCCCAATACAGTGTAAGGAGTGCCACAAAATCTTTACAGTCTGGGAAACACTGCGCCGGCACATCGAGTCGTGCCACTCGCGACTCTCTTTTAAGGACGTGACTTGCCAAGTCTGCTCCAAGGTCTGCAAGACTTCTGACACGCTCAGGGTCCATTTGAGAATGCATAAAGAGCGGCGGGGGAGAGTGTGTGACAAGTGTGGAAAAACTTTTAAAAGCAACGTCACTTTGAAGAACCACTTAGAGACCCATACACACCGCACACAAAACTACCCATGCGCCCACTGCGGCAAAAAGTACATCAACAAGAAAACCCGCGAGAGACACCTATCCCGACGACACACCAACAAACGATTCATATGCAGCTACTGCGCATACGTGTTCACCGACAAGGCCAACCTCATCCGACACATCATGATACATGAAAACCGACATCCTAAGTACAAATGCGATGTATGCTCCAGGTCGCTGACCTCCCAAGCCTCGCTGACAGTCCATAAAAGGATGCACACTGGTGAGAAGCCCTTCAGCTGTTCCCATTGCTCGAAGAGCTTCTCCAAGAGGGCGTGGTTGGTGGAACACGAGAGGAATCATACTGGGGAGAAGCCGTTTCAGTGTGCGGTTTGTGAGCTTAGGTTCTCGCGGCGAGGGTCGATGAGGCGGCATATGAAGGTGCATAATATGTGGGAGGGGTGCAAGAGGAAGAGTCGCGGCGGTCCGTGA
Protein Sequence
MDKWTNSCRACLSTSESFTYFLHENISPEEYWFCTSLEVKEDALPKSLCNVCYGLLTQFTEFKKLCIQSENILCNILKSLEAENKNCLNLKSELGDNVFEENLDNNTVVKIEHLADIDVLDTNVCDDIYEEEGTTVYNPIIKVHNSPTGKKYAKPVSKLKKTRRKFQFTCELCYKKFGYRERYEAHKLEHEGKTTAIYCAPCNKTFSTWGGLKRHNDCEHTRLTLDQLTCKLCSKVFKSPRTLNIHRSTHGERKLRICDVCGKGCKSDLTLKAHLETHIENRERRYTCPHCGKKFFSKKTCASHASRRHSDRRYICHHCDYPFTDKSNLAKHIMIHEGKQPLHKCDLCLKTFAAQSSLVIHKRTHTGEKPFGCSYCSKSFSNKRMLVDHHRIHTGEKPHKCTVCEQSFTQRGTMKRHMKVHDRICALIKDEPSSDVNVNEMEEKDTCEKSEHENGTESCSLLQIKVDAAKEDVAEEVLSDINDVTDSDAPETDLGGEDFEDHIEATKVSATKVANPTARSILPKNFKCDLCNRKFAFKERLEGHMLRHVGKTGPIQCKECHKIFTVWETLRRHIESCHSRLSFKDVTCQVCSKVCKTSDTLRVHLRMHKERRGRVCDKCGKTFKSNVTLKNHLETHTHRTQNYPCAHCGKKYINKKTRERHLSRRHTNKRFICSYCAYVFTDKANLIRHIMIHENRHPKYKCDVCSRSLTSQASLTVHKRMHTGEKPFSCSHCSKSFSKRAWLVEHERNHTGEKPFQCAVCELRFSRRGSMRRHMKVHNMWEGCKRKSRGGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-