Ebil019042.1
Basic Information
- Insect
- Epinotia bilunana
- Gene Symbol
- -
- Assembly
- GCA_947049265.1
- Location
- CAMRIQ010000200.1:160105-169143[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0027 0.22 13.2 0.2 1 23 39 61 39 61 0.95 2 23 0.0066 0.54 11.9 0.1 2 23 66 87 65 87 0.95 3 23 0.0066 0.54 11.9 0.1 2 23 92 113 91 113 0.95 4 23 0.0066 0.54 11.9 0.1 2 23 118 139 117 139 0.95 5 23 0.0066 0.54 11.9 0.1 2 23 144 165 143 165 0.95 6 23 0.0066 0.54 11.9 0.1 2 23 170 191 169 191 0.95 7 23 0.0066 0.54 11.9 0.1 2 23 196 217 195 217 0.95 8 23 0.0066 0.54 11.9 0.1 2 23 222 243 221 243 0.95 9 23 0.0066 0.54 11.9 0.1 2 23 248 269 247 269 0.95 10 23 0.0066 0.54 11.9 0.1 2 23 274 295 273 295 0.95 11 23 0.0066 0.54 11.9 0.1 2 23 300 321 299 321 0.95 12 23 0.0066 0.54 11.9 0.1 2 23 326 347 325 347 0.95 13 23 0.0066 0.54 11.9 0.1 2 23 352 373 351 373 0.95 14 23 0.0066 0.54 11.9 0.1 2 23 378 399 377 399 0.95 15 23 0.0066 0.54 11.9 0.1 2 23 404 425 403 425 0.95 16 23 0.0066 0.54 11.9 0.1 2 23 430 451 429 451 0.95 17 23 0.0066 0.54 11.9 0.1 2 23 456 477 455 477 0.95 18 23 0.0066 0.54 11.9 0.1 2 23 482 503 481 503 0.95 19 23 0.0066 0.54 11.9 0.1 2 23 508 529 507 529 0.95 20 23 0.0066 0.54 11.9 0.1 2 23 534 555 533 555 0.95 21 23 0.0066 0.54 11.9 0.1 2 23 560 581 559 581 0.95 22 23 0.0066 0.54 11.9 0.1 2 23 586 607 585 607 0.95 23 23 0.0066 0.54 11.9 0.1 2 23 612 633 611 633 0.95
Sequence Information
- Coding Sequence
- ATGGCAAATGATATTTACCAACCTACAGAAAGGGAAGAGGGAAGAGCTTTGACAGGTGGCGGCTGCAcccgcgcgtgcgcgtgcggggcgtgcgggcggcggcgtgcgcgcgcgcacgTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACatgcgccgccacgccgccgtgCACTCAGGTCAGTGCCTTGTGTACTATTAG
- Protein Sequence
- MANDIYQPTEREEGRALTGGGCTRACACGACGRRRARAHVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGQCLVYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -