Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.001 1.3 10.2 3.4 15 44 46 72 37 72 0.83

2 6 0.0013 1.7 9.9 1.1 26 44 125 144 122 144 0.84

3 6 4e-05 0.052 14.7 0.6 17 44 168 192 162 192 0.88

4 6 2.1e-05 0.027 15.6 0.4 17 44 216 240 210 240 0.89

5 6 0.0026 3.3 8.9 0.6 18 43 246 268 244 269 0.86

6 6 0.0088 11 7.2 0.8 4 29 261 286 259 297 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.001	1.3	10.2	3.4	15	44	46	72	37	72	0.83
2	6	0.0013	1.7	9.9	1.1	26	44	125	144	122	144	0.84
3	6	4e-05	0.052	14.7	0.6	17	44	168	192	162	192	0.88
4	6	2.1e-05	0.027	15.6	0.4	17	44	216	240	210	240	0.89
5	6	0.0026	3.3	8.9	0.6	18	43	246	268	244	269	0.86
6	6	0.0088	11	7.2	0.8	4	29	261	286	259	297	0.89

Coding Sequence: ATGTTAATCCTTGCATTCTATATTCCGTGCAGGGGCATCCACGACAACGTGTTCCCCTACAAATGCGACGTGTGCCCGTACCAGGGCCGCACCATGGACCTCCTGAAGGTGCACAAACGGTCGCACATGGCCGACAAGCCGTTTAAGTGCACCCAGTGTCCCAAGGCCACCACCACCTCCAGCAACCTCGCCAAACACATGCGCCACGTGCACAGCACCACCAGGCCTTTCAAGGTGGGtgtagagcggttacacacggctgTTGGCTCGCAGGCCGACAAGCCGTTCAAGTGCACGCTGATGTGTCCCAAGGCTCACCAGCTCCAGCAACCTCGCCAAACACATGCGCCACGTGCACAGCACCACCAGGCCTTTCAAGGCGGGCTCACCAGCTCCAGCAACCTCGCCAAACACATGCGCCACGTGCACAGCACCACCAGGCCTTTAAAGGCGGGtgtagagcggttacacacggctgTTGGCTCGCAGGCCGACAAGCCGTTCAAGTGCACGCTGTGTCCCAAGGCCACCACCACCTCCAGCAACCTCGCCAAACACATGCGCCACGTGCACAGCACCAACAGGCGTTTCAAGGTACGTGTAGAGCAGTTACACACGGCTGTTGGCTCGCAGGCCGACAAGCCGTTCAAGTGCACGCTGTGTCCCAATGCTATCACCTCCTCCAGCAACCTCGCCAAACACATGCGCCACGTGCACAGCACCATCAGGCCTTTCAAGTGCACATACTGCGACAAGGCGTTCTCGTACCAACACGACATGAAGCGGCACGTCAAGGACATCCACCTGCGGCAGGGGACCGTCGAGTGCGACGTCTGCTACAAAAAGTTCAACACCAAaaaaatacTACAAGGACACCGATGGAAGATCCACAAGATCAAAGGCGAGAGACAAGGACGGCTGCCCTCATACCTGCAGCACCAGATGGACGAGCACCACCACCCGCGCTCGCTCGAGGTCCCGGCGACACACATGGAGCCCGGCTACTGA
Protein Sequence: MLILAFYIPCRGIHDNVFPYKCDVCPYQGRTMDLLKVHKRSHMADKPFKCTQCPKATTTSSNLAKHMRHVHSTTRPFKVGVERLHTAVGSQADKPFKCTLMCPKAHQLQQPRQTHAPRAQHHQAFQGGLTSSSNLAKHMRHVHSTTRPLKAGVERLHTAVGSQADKPFKCTLCPKATTTSSNLAKHMRHVHSTNRRFKVRVEQLHTAVGSQADKPFKCTLCPNAITSSSNLAKHMRHVHSTIRPFKCTYCDKAFSYQHDMKRHVKDIHLRQGTVECDVCYKKFNTKKILQGHRWKIHKIKGERQGRLPSYLQHQMDEHHHPRSLEVPATHMEPGY

Sequence clustering based on sequence similarity using MMseqs2