Esuc010314.1
Basic Information
- Insect
- Epicampocera succincta
- Gene Symbol
- -
- Assembly
- GCA_932527255.1
- Location
- CAKOBP010000042.1:58113-64052[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.056 3.6 8.3 0.5 1 23 365 388 365 388 0.92 2 11 7.9 5.1e+02 1.6 0.2 2 9 395 402 394 409 0.83 3 11 4.6e-07 3e-05 24.3 0.7 1 23 450 472 450 472 0.99 4 11 0.00025 0.016 15.7 1.0 1 23 480 503 480 503 0.95 5 11 0.00017 0.011 16.3 1.8 2 23 510 532 509 532 0.95 6 11 0.05 3.2 8.5 0.5 1 20 561 580 561 582 0.93 7 11 0.0012 0.075 13.6 5.5 1 23 609 631 609 631 0.98 8 11 0.0055 0.36 11.5 2.9 1 23 638 661 638 661 0.97 9 11 0.00083 0.054 14.1 3.8 1 23 667 689 667 689 0.97 10 11 0.19 12 6.7 2.5 2 23 695 719 694 719 0.93 11 11 0.0045 0.29 11.8 2.5 2 23 723 744 722 744 0.95
Sequence Information
- Coding Sequence
- ATGGATGGGCTGGAACAATTGGAGGCATGTCGTATATGTGTAACTTGTTTTCCCCTAAAGGATATGGATTTTATTAATATCTTCCAACCACATGAAGAATTTCAACATGAACTTGAGTTTATACAGGGTGAAATACGCCAATGGAAATTAAAAATACACCCAGATGACGGTCTGCCGCAAAGAATTTGTGCTAATTGTTTTGCCAAATTTTGCAGTATAGAAATGTTTCGCAAAGAATGTGAAATGGCTCAGAAAAAATTGGTCGAAACTGTGATGCATCAAACACCCATAAATGAACCCGAAGTAGAGCATCTGATCAAGAACAACGAGGTGCCCTTGCCGCTGGTGGGTAATTATGAGAACGGCAACGTTTCTGTCGATTCTGGCAGCAATATTTTGGTTTCTTCGGTCAATTTAGCACAAACTGATGTCTCTCTGAACGATTTCCCCGTATTTGATCAACAGTTTTCACATTATGACAATCCTGCTTTGATTGATGCCTCTTCCACTTTACTGGATAATAACTTTATAACACCGGAACCTACACAAGAATTGGGGTTTTTATCGTCACAAAACCTATTTACATTTGATACTACCGAACCCCCGTCGACGGGAACACTGCCATTAGATGAGACTGAAACAACGTCCATAGTGAATGATATACTAGTAGAAAAGTCTATTAATGAAGTATTTATAAAACATAATGATCTCGAAGACATGTTACAGCACAGTATTATACCGACTACAACTAAACTTATAACGCAAAGAACCCGCCTTAATGTTGATCAGCAAGAAAAAACCACAAATACTGATTTTGCCAATATGGACTGCAATAAAACCCATTATCGTAATAGTCATGCTATGAAATTTAAGAGTGAATTCCAAAATACAACAATAACGTTTTTGAACCGTGAAGACAACAATTCGGATATTGAGTGCGAAGATACTGATATGAATGCCCGTTTGAAGGGGTTTTCTTATGCTTGCCATTATTGTTTTTGTCCAGAAGTAGGACTTATAGATCATCTTGTCTTCCCCAATGAAGATGCTTTATCTCAGCATTTTTTTGATGTTCACGAACCCAATCGCCCCTACACTTGCCCTAAATGCCCACAATCCAGTAAAACCAAGTTATTGCGAGACAATCATGTCAGGTTAATACACAAAATAATTGAATATCAAACCTGCAATTATTGTCAGAAACGTATAAAAGGGTCAGCTGATGTCCACCAATACAATTGTCAATTTGTTGGCAATTGGAAGTGTGAACAGTGTCAAGAGAAATTTCATAATTCACCACTTTATCGCTTTCGTCTGCATCAGCGTCAACATGACCGTATTAAACGATTCAAGTGTCGTTTATGTGAACGTTCTTTTGTGAGAAAAGCCAATTTAGAGGCACATCAAAGGATACATAAGGCAGAAGCACAATCTATTTTCACATGCAACGTATGCAATGTCAATTTTGTAGATGAGTATGAACTTAAACGTCACAAGTACAAAGAACACAATGACGAAGCGCCTCTGAAATGTAAACTTTGTAAAAGAGGTTTTTCTTCAAATGTATTTCTACAACGCCATATAAATCAATTTCACTCGGGCAATACAAACATCAATAACAGCAGCAGGAGTACCCCTCCATCCACAAAATCCCCGTCACCTTCAACGTCAGGGGAAAAACATATTTGTTTGAACTGCAATATGGATTTCAAATCCTTACAAAAACTACAACAACATTTGGAATTGGGTCGCGATAAAAGTGGCTATTGTTTGTATGCATCGTGTAGCAAACAAGAACGTCGCAAACTTCAACGTCAGGGTGTATTTCCTTGCTTCCATTGTCCGAAACGTTTTCATTTAAGGTCACAGCTGGACAAACACTTAAACACACATGATGCTCGCTTACGTCCATTCCAATGCGAACAGTGTGTAACGCGGTGTCGCACCTCATTCGAACTAAAACAACATGTTAATGTGACTCATTTGAATATTAAGGCATTTTCGTGTGACAAATGCGCCAAGTGTTTTGGTTATAAAAAGGACTTACGGGATCATATGCTTTTTCATGCAGAAATTAACGTACGTTGCACGGAAAAAGGTTGCGTTTATGTTTGTAAAAACGAAAAGGCTTTAAATGATCACATACGACACAAACACCGTCTCTTGTCTTGTGAATACTGTCATGAACAATTTACGCGACAGAAATTAACAGCTCATTTACGTAAAATACATCGTACAGAAATAGACGTTGAACTAGCTGGCGAATCTGATAACTTTTATAAATCTCAATTACTTAATAATAACAATGACATTACACAAATCTCGTTTAATTTACTTAATATTCAACAAGAAGAGCAACAATTAACAAAACCCTCACCGCAACTGACACCCACATCCAATATGTCATCTCAGATTTTAGTTGCCGCCATAAACAGTGTTCAACTGCAAACGCAAACTACAATCCCATCAACATCTGCATTATCTACAATATCATATACATCGGCTGCGCTAGTAACACAAACACCAATCACTTCTATTCCTACATCGTCACCACCATTAACAACTTGTTTAACTAACAACACAACAGGTACCAGTAAAATAGGTTCCAATTTTGCCTCTATTTCTACCCCCAACATGATTGATGATGAAGTTGTTGACAGCCATCATGATCAATTGTGCACCATATATACTAACGATTCTCATGATTTAAATAGCACTGCATTAACTCTTAATAGTCTGGTCCCGCATAATAATGATTTAAATTTAATAGCAAATGACACCAATATGTTTTTAGTACCCCCTACTTCATCTTCATCGGTCAGTGACAACCAATTAGATCAGTATTTTATGGCCTCTTTAATTGATACCGAACAGGAAATAATTGTAACATAG
- Protein Sequence
- MDGLEQLEACRICVTCFPLKDMDFINIFQPHEEFQHELEFIQGEIRQWKLKIHPDDGLPQRICANCFAKFCSIEMFRKECEMAQKKLVETVMHQTPINEPEVEHLIKNNEVPLPLVGNYENGNVSVDSGSNILVSSVNLAQTDVSLNDFPVFDQQFSHYDNPALIDASSTLLDNNFITPEPTQELGFLSSQNLFTFDTTEPPSTGTLPLDETETTSIVNDILVEKSINEVFIKHNDLEDMLQHSIIPTTTKLITQRTRLNVDQQEKTTNTDFANMDCNKTHYRNSHAMKFKSEFQNTTITFLNREDNNSDIECEDTDMNARLKGFSYACHYCFCPEVGLIDHLVFPNEDALSQHFFDVHEPNRPYTCPKCPQSSKTKLLRDNHVRLIHKIIEYQTCNYCQKRIKGSADVHQYNCQFVGNWKCEQCQEKFHNSPLYRFRLHQRQHDRIKRFKCRLCERSFVRKANLEAHQRIHKAEAQSIFTCNVCNVNFVDEYELKRHKYKEHNDEAPLKCKLCKRGFSSNVFLQRHINQFHSGNTNINNSSRSTPPSTKSPSPSTSGEKHICLNCNMDFKSLQKLQQHLELGRDKSGYCLYASCSKQERRKLQRQGVFPCFHCPKRFHLRSQLDKHLNTHDARLRPFQCEQCVTRCRTSFELKQHVNVTHLNIKAFSCDKCAKCFGYKKDLRDHMLFHAEINVRCTEKGCVYVCKNEKALNDHIRHKHRLLSCEYCHEQFTRQKLTAHLRKIHRTEIDVELAGESDNFYKSQLLNNNNDITQISFNLLNIQQEEQQLTKPSPQLTPTSNMSSQILVAAINSVQLQTQTTIPSTSALSTISYTSAALVTQTPITSIPTSSPPLTTCLTNNTTGTSKIGSNFASISTPNMIDDEVVDSHHDQLCTIYTNDSHDLNSTALTLNSLVPHNNDLNLIANDTNMFLVPPTSSSSVSDNQLDQYFMASLIDTEQEIIVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01377061;
- 90% Identity
- -
- 80% Identity
- -