Esuc010775.1
Basic Information
- Insect
- Epicampocera succincta
- Gene Symbol
- ush
- Assembly
- GCA_932527255.1
- Location
- CAKOBP010000043.1:7646556-7656377[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.073 4.7 8.0 0.0 6 20 293 307 289 309 0.95 2 9 0.00037 0.024 15.2 0.8 1 23 364 386 364 386 0.98 3 9 0.089 5.8 7.7 1.0 2 21 415 434 415 435 0.92 4 9 0.065 4.2 8.1 2.9 2 21 838 857 837 858 0.93 5 9 0.014 0.92 10.2 0.0 3 21 899 917 897 918 0.92 6 9 0.0023 0.15 12.7 0.1 1 23 1007 1029 1007 1029 0.99 7 9 0.017 1.1 10.0 1.4 1 23 1035 1057 1035 1057 0.99 8 9 0.00042 0.028 15.0 0.6 1 23 1143 1166 1143 1166 0.96 9 9 0.56 37 5.2 0.7 2 20 1295 1313 1294 1315 0.91
Sequence Information
- Coding Sequence
- ATGCCCAATGCCTTGACCAAGACGGCAGGATATGCCAAGCAAGGGAGCACAACAAATGGGCACACACAAGTTTTACTGCCGGTCACAGAGACACTGTGTCCATCAAAGCCATATTCCAAAGATTTTAATCCTAATAATATATCAAGCCCAATGGACGATCACAGCGAAGCAAATAGAAGCACTCCAGAGAATAATCATCAATCATATCGACAGCCGCAATACGAGGCAATAGAGACTGATTTCAAGATGGCAGAAAGTCAAAATAGTGCAGATACTGATCAGCAGCCGAGTGAAGAGCAAGATGCTGACATACAACCGCCCCAGCAGAAGCGACCGAAAATGTCTTTGGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAACGCAAAGTAATAGTCCTTCCGAGCACTCAGGATTGGCCAGAAGTGCTGAAAATTCGAATGACTCTAACAAATGTGATAGTTTGCAAAATCGAAACCATGAATCAAATGCGGCCAACCGCAGATCTTCAAGTCCCTCCGTAAGACCCATAACACCAGCCACAAACCCTGCCAAGGAAGAGGAAGTTCACAATGAAAGCATTTGCTCGCCCACATCAGCTTCAATGCCTAAGTTGAGGCTTAATGCATTATTGGCCTCAGATCCTGCCCTCATGCCAGATGCCAAAGACTTAAAGGTTGTTCACGAAGAGTCGCAAACCCAACAAAGAATTGCCCGCTTGGAACAACATCTGCAACAACAGATGCAAACCGAAGAAGCGGAGGATCTGGAAGCGGAACGCATCCCACCTCCAGCTGCTTTAGTCGAACCAGCTAAGAAATCCTTGCCGGCCGCTGTGGAACCGCCGCCCCAACGTATGAAAGTTTTTATGTGCATACCCTGTGGCATAGGGTTCAGCTCGCCCTCTACCCTAGAAGCCCATCAAGCGTATTACTGTTCGCATCGCCATAAGGAAACTGACGACGATAGCTCATTGTCTGCAGCCATAGCTGAAAAATCGTCCGCCTCTCCAACGCAGGCAAACAATCCAGCAGCAAATACTTCACTCTCCTCATCGGAACCAGCAGCGAAAGTCTCGAAAACTGGCAAGCAATACGCCTGCACTCAGTGCTCCTACAGTGCGGACAAAAAGGTTTCGCTTAATCGACACATGCGCATGCACCAGACATCACCAGCACCCAGCTCCAATGCTTCCAATAACGGCAGCGCCATAATGGAAGATAACTCTAGTCAACAAGTCGATCGTTATTGTAGTGAGTGCGACATACGTTTCAACAACGTCAAAACCTACAGAGCTCATAAGCAACACTATTGCAGCTCCAGACGAACAGACGGACAACTGACACCAAAATTAGAAGTTTCAACCGCCTCGACAACACCAAAGCTGCCGGCCGTAGTGAGCGGTGCCATCAGCCCTCAAACCCGTACGAAAACGCCCACTCCGGCGATGGTGGCCGCAGCAGCAGCCGCTGCTGCAGCTGCCTTGCAGCAGGCACCAGCTACTCCCTTCCTGGCTTTGCCCACAAATCCCATATTAATAATACCATATTCATTGATACGATCCGCCAGTCTTATTGCTGGACCCCTATCCTCACCTTCGCCGTCTGTGGTAAGTCCAGACACAACCTGTTACACTTTAGACAATGGCAATTTGAAACCTTTGGCCACCGCCCTGAACATAAACGCTTTAAATGCGGCTTCCTCTGTAGCAAATAGTTTGGCTGCAGCAGCCGCTCCTGCTATAGTGGATGCAACGCGCCAAGCAAATATAAATGAAACACTGCTCACTGAAAAGAATGTGAAACGAAATGTGGATGAGTCCTCCGAGAATACCAGCAAGAGAAAAGGCGAAGGTTTAAGAGAATCAGCTCCCCTGGATTTGTCTCTACGGCGTTCGCCAATAGCTGCTTTGCTGCAGAGACAACGTTTCAATACCGCCTCACAGTTTCTAGACAATGAACAGCAGCGCCTGGATATGGAAACTCTGTTAGAGGCCGGCAAGGAAAATTTGGCTCTGGATGAAACTGGTAGTATTACCCCGGAGCAAATCGTGTGCGCCCCTTCGCTACCCAACAGCCCCTCAATGAGTCCCTCGCCTCGAAGACGTGTTATAAGTCCTCGAAGTTCCGGTGCTGGTAGTACTTCATCCATGTCGCCGCCAGCCACTATACCACCGAATGCTTTAAGTGCCGCCTCGAATCCAACCAACATTCTGGATAATTTGCAGTTGCGTTCAATGCTGCCGGCCGAGCTGCTGAATCCTTTGCTGGCAAAACAAAATATGGAATTGGCTTTGAAACTATCGGCAGCTGCTGCGGCTGCCGTGAGCTCTTCTACGGCGGCCGTGAGCGGGGGCAGTTCTACACCAGCGGATTTGGCCGCTGCAGTGGCAGCAGCCACAGGCCGAGGATCTCTTTTGGGTTTACCGGTTCTGCCGCCAAGTGCGCCCAACACTGTTCAGGTGCCGCCGACCAGTGCAAACCAACCCCAAATATACGTCAAGCAAGGCGTCTCGAAATGCAAGGAATGCAACATTGTGTTCTGTAAATATGAGAACTATTTGGCCCACAAGCAGCACTACTGTTCTGCCAGAAACCAAGAGCCAAGCGACGCTGAGAACAAGGTTTCACCAACGCCACCGTTGGCCAGCGGAGCTTCCCCTGCTGAAACAACTCCTGTGGCCTATCAACAGCTCATTTGTGCCGCCTGTGGCATTAAATACACCTCCTTGGATAATTTAAGAGCTCATCAAAACTTCTATTGTCCGAAAGGTGGCAGCGTGGCAGCTGCTGCAGCAGCAGCTGTTGCCGCTAACACCGACAACTCTCATACACTTTCCAAGAAGGAGAAGTGTCCTAAGTGTAAAACCATACATGAACCAGCAGTAGCCTGTCCTCCTCCACCAGCACCACAACAGTCCAGCCTACCACAAACCATGACCACTGCAAGTTCGCAGCTGCCACAACAATCATCTGCTGCGAACGCTCACTCCTCTTCTAGCGGCAGCAGTAACCAAAATGTCTACAAATGTCCCTTGTGTGATGCCGTTAGTGTGACAGCCAGTGAAAGTCGCAAGCACATGGAAACTCATGGCACTGTCAAGGCATTCAGATGCACCATTTGCCGCTACAAGGGCAACACCTTGAGGGGTATGCGCACTCACATACGCATGCATTTCGACAAGAAAACTTCGGACATCAATGAGGAGCACTACATGGCCTGCATCTTGGAGGATGAGAATATAGAaataccaagtgctgcctcgctaagtcaggagcacttggtgcaacagttcgctgcagctcaacaacaacaacaacaacaacagcagcagcagcagcagcagcaacagcaccaaaaacagttagtggctgcagctgctgtggtagctgctggccttcagcaacaccaccaacaacagcagcaggtgttcaattgtgatatttgtaattaTTCTTCCACCTATAAAGGCAATGTGTTACGTCATATGAAGTTGGTGCATCCTCATGCTGTGCCCAACTCTCCCTCACTGTCTCCAGAGGTCGGAGATTTGGAAGCAACGGAAACGGCTTCGCTGAGTAGCAGCCATAATGGTGACAACGGAATGAATAGTTTTGCCATCAAGTCTGAGCCCATGGATCATCACAGCACGACAAACACAAGTCCGGCAGTACTGCTAAATCCGCATGACAATAACAATTCGCCGATACCGAACATCACTCACATTGCAGCCAGCGACATGATACATCATATTAAGTCGGAGCCCATGGAGATCTTAGTCGAACCGTCAGCTTTACATATACCACCGCCGCCGACACTCCGATCACCAGCCATAGGACCGCCTCCCCTACTTAATGCCACACCCGAAGAGAATATCAATCAGAAATATTGCCAGACATGTGACATTTCATTCAACTACATGAAAACCTATTTGGCCCACAAACAATTCTACTGCAAAAACAAACTGCGTAGGCCGGATACCAACGACAGCCCCAGCCCCAATGCCGGTCACATAATAACGGGCGTGCCCTCGCCCAACACTTTAATGCTGCAAAAGAACAAAGAAAACCTGCAGGAAGCCGCCATTTGA
- Protein Sequence
- MPNALTKTAGYAKQGSTTNGHTQVLLPVTETLCPSKPYSKDFNPNNISSPMDDHSEANRSTPENNHQSYRQPQYEAIETDFKMAESQNSADTDQQPSEEQDADIQPPQQKRPKMSLEEEEEEEEEETQSNSPSEHSGLARSAENSNDSNKCDSLQNRNHESNAANRRSSSPSVRPITPATNPAKEEEVHNESICSPTSASMPKLRLNALLASDPALMPDAKDLKVVHEESQTQQRIARLEQHLQQQMQTEEAEDLEAERIPPPAALVEPAKKSLPAAVEPPPQRMKVFMCIPCGIGFSSPSTLEAHQAYYCSHRHKETDDDSSLSAAIAEKSSASPTQANNPAANTSLSSSEPAAKVSKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAPSSNASNNGSAIMEDNSSQQVDRYCSECDIRFNNVKTYRAHKQHYCSSRRTDGQLTPKLEVSTASTTPKLPAVVSGAISPQTRTKTPTPAMVAAAAAAAAAALQQAPATPFLALPTNPILIIPYSLIRSASLIAGPLSSPSPSVVSPDTTCYTLDNGNLKPLATALNINALNAASSVANSLAAAAAPAIVDATRQANINETLLTEKNVKRNVDESSENTSKRKGEGLRESAPLDLSLRRSPIAALLQRQRFNTASQFLDNEQQRLDMETLLEAGKENLALDETGSITPEQIVCAPSLPNSPSMSPSPRRRVISPRSSGAGSTSSMSPPATIPPNALSAASNPTNILDNLQLRSMLPAELLNPLLAKQNMELALKLSAAAAAAVSSSTAAVSGGSSTPADLAAAVAAATGRGSLLGLPVLPPSAPNTVQVPPTSANQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEPSDAENKVSPTPPLASGASPAETTPVAYQQLICAACGIKYTSLDNLRAHQNFYCPKGGSVAAAAAAAVAANTDNSHTLSKKEKCPKCKTIHEPAVACPPPPAPQQSSLPQTMTTASSQLPQQSSAANAHSSSSGSSNQNVYKCPLCDAVSVTASESRKHMETHGTVKAFRCTICRYKGNTLRGMRTHIRMHFDKKTSDINEEHYMACILEDENIEIPSAASLSQEHLVQQFAAAQQQQQQQQQQQQQQQQHQKQLVAAAAVVAAGLQQHHQQQQQVFNCDICNYSSTYKGNVLRHMKLVHPHAVPNSPSLSPEVGDLEATETASLSSSHNGDNGMNSFAIKSEPMDHHSTTNTSPAVLLNPHDNNNSPIPNITHIAASDMIHHIKSEPMEILVEPSALHIPPPPTLRSPAIGPPPLLNATPEENINQKYCQTCDISFNYMKTYLAHKQFYCKNKLRRPDTNDSPSPNAGHIITGVPSPNTLMLQKNKENLQEAAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00260189;
- 90% Identity
- -
- 80% Identity
- -