Basic Information

Insect: Epicampocera succincta
Gene Symbol: TRERF1_2
Assembly: GCA_932527255.1
Location: CAKOBP010000047.1:1233903-1248583[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 5.5e-05 0.0036 17.8 0.3 2 23 312 333 311 333 0.97

2 6 2.4e-06 0.00016 22.1 1.5 1 23 339 361 339 361 0.99

3 6 0.00014 0.0091 16.5 2.6 1 23 367 391 367 392 0.95

4 6 0.00069 0.045 14.3 0.8 2 23 627 648 626 648 0.97

5 6 0.0019 0.12 13.0 0.1 1 23 1786 1810 1786 1810 0.97

6 6 0.00011 0.0072 16.8 0.8 1 23 1883 1905 1883 1905 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	5.5e-05	0.0036	17.8	0.3	2	23	312	333	311	333	0.97
2	6	2.4e-06	0.00016	22.1	1.5	1	23	339	361	339	361	0.99
3	6	0.00014	0.0091	16.5	2.6	1	23	367	391	367	392	0.95
4	6	0.00069	0.045	14.3	0.8	2	23	627	648	626	648	0.97
5	6	0.0019	0.12	13.0	0.1	1	23	1786	1810	1786	1810	0.97
6	6	0.00011	0.0072	16.8	0.8	1	23	1883	1905	1883	1905	0.98

Sequence Information

Coding Sequence: ATGTGCAGTGCGTCAGTGGGTACAGAGGCTTCGGTAACACTACAATTGCGCGATGTTAATTCAAATGACTCGATACAATCAAATCAATCATCCTCAGAAGCGGCGGCTGCAGCAGCAACAATTGTTACATCTTCAACAAATACTCATCATACAGCCGGCACAGGAGCAGCAGTCCCAACAACGGCGTCCACAACAACATTGGATAATGCATTAACCATTGGTTATCCCGATCCAGAAATGTTGGCTGATGTCCTGGGTACTTTACAAACAGCATCTCTAAAAAATACAAATCCAAGTGGTGAAAGTACAAAGATTTCCTCCAAATTAACAAATACCAGCGATATTTCAAATGCCAATTTTAATGGCGCAATTAAAAATCGTATAACAATTAGTAAACGGTCCGCAAATacggtatcgacttcaacgaacacttcgaccgcggtgaacaagacaaacagttacatcaaaaattgtcttatacgtagcagtagttgcagtaatactaccaatataacgtccctggctcagataatgagcaatagtagtaacagcaatagcaccaccaacaacggccacaacaatagcaacagtaacagcaatcaaattaacaacaataacaataacacaactgtcatctgcaacggcgtcaacaatagctgcaacagcaacagcaatttgagtcaaattaacagcagtcatcataccaccaacggcagcagcaacaacagctgcaacagcaattttagttccagcagtaacgacagttgcttcagctacagcagcaacagcagcagtggtaattctgttgcccgcagtgtaacatcgttgagtcacggtagccgcaaagttcctggtccattaacgacaaatCCACCGAAAATATTAAAGAAAAGCCGTTCAAAAATTTCATCCCCCAGTCGTCACGGTCCACAGCAATGCCAGATTTGTAATAAAATTTTTGGAAATGCGTCAGCTTTGGCCAAACACAAACTGACACACAGTGACGAACGGAAATACGTGTGTGTTATGTGCTCGAAGGCATTTAAACGACAAGATCATTTAAATGGGCATATGATGACACATAGAAATAAAAAGCCATATGAATGTAAAGCTGAAGGTTGTGGCAAATCGTATTGTGATGCTCGTTCATTAAGAAGACATACTGAAAATCATCACGCCAATATTGTAACACCACACAATCAGCAACTCGCAATATCCAATAACAATTCCAATTCTAATTTAAGTCTATCCCCAGCAACAGCAAACGGAGACGCCAGCTCGCCAGATGGAGCTACTTGTCTAGGCACATATCTTTCTAATGGCGGTACAGTGGTCGATGCAGCAACCGGCCTAGCTTTGACTGAAGAAGAATTAAAAGCTTTGAATGTCCCCCTTAAGACAGGTGTAACTTTGTTATCGCCCACTTCGACCACTTCCTCAATGTCCTCGTCCAGCAGCATGTCGAACAGTACCGGGGCAACCATAACGCTTACCGACAACAGCGGTAGCTTAGAAGGTGAAGGTTTGACACGCGAACAGCTGGACTTAATAAGCAAAATAATGCGACAAACTAAACAAACAACGGCCCAAGTGACAGTGTCGTCTCCGACCAGTAGTCAATCATATAAAATAGATACAAATCCCCAATCCACGGTTCAGACACAAACGCAAAACTCCCGACCCAGAACCTGGAATATGCAGTTGCTTAATACCTCTCAAAATGTTGCCATAACGGTGGATGAGATCAATGCTGATAACGGCAATGATTCTTCCAACAAGGTTCCATCGAACATTAAAGAGGAGGAAATCGAAATTGAATTATCCAATGCCATCAACTCCAATCTCTTTAATTTGGTTAAAATTGATCAAAAACCCGTAGAGTGCAATTTATGTCATCGCAAATTTAAAAATGTACCTGCCCTTAACGGTCACATGCGTTTACATGGCGGTTATTTTAAAAAGGATCCGGAGACGAAAAAAAATGAAAAGAAAGAGAATAATGGACCGCCCTTGCAGACGGCCAGCATCGGAGTTAGAGCCTTGATAGAAGAGAAAATTATTAGCAAACGCAGCAAAGATTTAAATAAGGGTGCCTTTGTAGTCCCCGCACCACCCTCAAATAGCAGCCAAAACAATACAACAACCATTCGTAGAACCGTTTGTGACCTAGATAGTTTTTTAACTCCTAAAACACAGACGAACAATGCAACAAACACAACAACTAGCCAACAAAATTCCAtacaacaacagcagcagcagcaacaattaccggcggtaacaactattaAAACTAATTCGAAATCGAACGTAAATGTGCAGGATATAAATTTGCCGCAAAGTATTGAAGTTTTTAGTACCAAACAACAACAGCAGCACCACCATCACCAGCAGCAACAAAAGACAATGAATAATATAGGAGTTGGCACCACTGTCACCTCCTTAAATGCCGACCGTAGCGCAACGAAAACACCTACATCTACAGCAGCAACGATAAATACAACGACAACTAGAAGTACATCAACCGATCCAAAAGATTCGACTTTGATCGAATTATTAAAAAGGGGTACCCGCATAGCGGTCACCCAAAAGCCGCCAAACAACAACATGCCACTGGGTGGAGTGACCCGCCAAATAATAACGAATAAAAATAACTGTAGTGTCATTATACCCTCCGAAGTCCAGGTTGTTTCGACTAACGGAAAGCTCAAAAAAGATGACAACCTACAAATGTCAAATGCCACAAACGTTACACTGCCTGATGGCACACCATTGTCCTTGACGATAGCCCAGGGAGCGGATAGTAACAGTGAAGTATACACAGTTACCTATACCAGCGATGGTTCCGCTTTATTTGGTGATAATGAAGTCTACAATGTCAATGAAGCCGAGATGTTGTTGCAAACAGTTGATACCATGCAACTGCTGGGCGGTGCTGATGACAATTTAAAATCTGAACATTCCGAACAATTTGAGATAATGGATAGTAAAATAAAACTGGAACTCGAACAGCAAAACTCTGTGGATCAGCAGCAGCAGCAGCAAACGCTGCAACAAAACTCAAATCAGTGTCAAACCACACAAACTTTACCAAACTTCCAACATTTCCATTCCAAAGAATTAATCATTCAAAATCCAGCTTTAATCAATCACCAGCAAATCAGATCAAATACCCTGTCTTTGCCTCAAGACATCAAAAATCAATTTGCCTCTAGTCTTAATTCGCCCATACATTCTCCTTTAGCCTATCCCACACCTCCTTCGAGTCATGAAAATGTTACCCAAACATCACCGTACATAGAAGACAATCATCACTTCAATGATACGCAAAACATTTTCTTCAGCGAGTCGCTGATTTCGGCCAGTAGTTCGAGAGAAAATGAAAATGATAAAATAATGAAGTTGAAAAATGTTCTGGGCGACAACTCCTTCGATTCCAACATTAAAGTCGAAGATTTGCTGAATGGCACAGATCCTGATGCAGAATGTGATTTGCGCGAATTTGCCGAAGCCAGTCTGTCCTTTCTGGATGAGGATCAAGAATTTCTTAACGACTCCCGTAATGCCACTTCACCGCTTTCGGAATCGTTTTTTACCAGCGGCATCGGCACAGCCGAGGAGGTAAAAGAAGTTTTGCGCGAAGTCCTGACCGAAGATCAGCTTAACTTAAATTGTGATAATCAAGGCGAGAACATAATTGACTTATATTATTTTCCCGGTCTAAGTTTGCAATCACAAATGATGCCCAACTCTGAAGATCCCTTATTGTCCTCGTCACCTCGAGATtttggccagcaacaaaaaatgcaaataccaatgcaagttcaacaacaacagccaatcgcctcacagcatcagcatcagcatcagcatcagcatcagcatcaacatcaacaacaacagccacaaacccaacacattcctcaacaacagcaacatgaacaacatgagcaacatcaacatcatcatgtacaattcagtaatcaacagcagcacttgatgcaaccccaaACTGTTAAAATATCGCTAGACGCGAACACTCAAAGTGATGCAACATCCTCCACAGAAATCAACCAGTTAATTTTGAATCTACCCACGAATATAATCCAAAATCCGGGCAATGCAACATCTATAGAAACATCTTCCTcaagtaccgctgctacgctgcattataatgtacaaaatttgccacaagtacaaaatcaatccaacaatattcaacaccagcagcagtcacagccgcaacagcagcaccagcagcaccagcagcaccagcaattgcagcagccgctgcagccacaatttctaacatccgcaaACATAAACTCACTCAACGAGGCCTTATTGCAGCCTATAATCTATACAAGTGGTACCACCGATAAAATGGAACTCAAATTAGATAACAACCCCAACTCTACCAACCCACAAACACAAAATATAACTAATCTCAATAAACCCCTAGAAATTGTGAAGACGGCAAGTCCATCAGCAGCAAATCATATAATTTTTTCTCAGCAGCAGAGTCACGCCTCAACTTCCAATGCCTCAACTAACTCATTACAGCCGCTGTCAAATCAAACCAACTCAATATTAAAGCGCCGTTTGAAAGGTCACACTTTTCTGGACAGCTCCTCAACACATTCTTATTCCAAATATCAAGTACTTTCACCCTACAAGTCCAAATTACGCAAGCCTTCGCGCACCCATTACACACCAGCCCCAATACTAAATCCCGAGCGAAAGGGTCATGGTCTATATTGCAACGTCTTAAAACAAATAGGTTGCTCGCTATTGACCTTCGACAACTTTGAGGATGATTTTGATGATCCGGTTGGCTTGGTCGATTTTTCCGATGAATCCAAAGTCAATCTAGGCTCCGCCTATCAAGCCGCTATACCTGCATTTATTGAAAACGCTTGCCGTAGTTCATTTGTCGAAGAAACAGCCGGCTGTGACCTTATGTGGGATCCAGAGGTTCAAAGAGATGACAAAATTCTGATGAGATTTATTGACTTAAGTAAATCCTCAGCCGTGCCGTTGGGCAGCCACTCTGAAGAGGTGGCCCTACAGGCCTTGCTAAAGGCTCATGGTAATACAGCAACGGCGGTCTTAAGTTTACTGCAGACCCAGTCGAACTCATTCCAAATAAAATGGTCAGCTCCTGAATTGGAGATATTCCTGAAGGGTTTGGAAAAACACGGGAAGGAGTTTAGTAAAATAGCAAAAGAGCTTGGCGCAAAAACAACTGGAGAATGTGTACAAATGTATTACTTCTGGAAAAAATTATGCGTGGACTACAAAGTCACCCACCTCAAAACCGAAACACCACCACAGAACCATGCCAATGATCCCAAACCTTATGTTTGCGAAATACCAGATTGTTCAGCGAGTTTTTCTTCCAAAGCTGCTCTGCATGGTCACACACGCATCCATACTTATGGCCGCAACGCCCACAATAATCAACACAGTAATAACCATGCAGGGGGGGCAAGCGCCACTGCAACAGCTACTAATACCAATGCAAATAACCCGCAAGGTGCTGCTTCCCACAGCAATACTCATCCAATGCATAACAATTCCCAATCTAGCAATAACAACCCGGCGAATCCGAATCAAAAAGACAACAATACGAACAAAGACAATATCGAATTTCCCTGCAAGGTGTGCGGCAAAGTATTCAATAAAATTAAAAGTCGTAGTGCCCATATGAAGACCCATCGTGCAACAGATAATGAAACAACTGTACAAACTACAAATAATCAAAATCAAATAATACATCAACAACAACAACAACAACAGCAACAGCAACAACTAACACAACAATTATAA
Protein Sequence: MCSASVGTEASVTLQLRDVNSNDSIQSNQSSSEAAAAAATIVTSSTNTHHTAGTGAAVPTTASTTTLDNALTIGYPDPEMLADVLGTLQTASLKNTNPSGESTKISSKLTNTSDISNANFNGAIKNRITISKRSANTVSTSTNTSTAVNKTNSYIKNCLIRSSSCSNTTNITSLAQIMSNSSNSNSTTNNGHNNSNSNSNQINNNNNNTTVICNGVNNSCNSNSNLSQINSSHHTTNGSSNNSCNSNFSSSSNDSCFSYSSNSSSGNSVARSVTSLSHGSRKVPGPLTTNPPKILKKSRSKISSPSRHGPQQCQICNKIFGNASALAKHKLTHSDERKYVCVMCSKAFKRQDHLNGHMMTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHANIVTPHNQQLAISNNNSNSNLSLSPATANGDASSPDGATCLGTYLSNGGTVVDAATGLALTEEELKALNVPLKTGVTLLSPTSTTSSMSSSSSMSNSTGATITLTDNSGSLEGEGLTREQLDLISKIMRQTKQTTAQVTVSSPTSSQSYKIDTNPQSTVQTQTQNSRPRTWNMQLLNTSQNVAITVDEINADNGNDSSNKVPSNIKEEEIEIELSNAINSNLFNLVKIDQKPVECNLCHRKFKNVPALNGHMRLHGGYFKKDPETKKNEKKENNGPPLQTASIGVRALIEEKIISKRSKDLNKGAFVVPAPPSNSSQNNTTTIRRTVCDLDSFLTPKTQTNNATNTTTSQQNSIQQQQQQQQLPAVTTIKTNSKSNVNVQDINLPQSIEVFSTKQQQQHHHHQQQQKTMNNIGVGTTVTSLNADRSATKTPTSTAATINTTTTRSTSTDPKDSTLIELLKRGTRIAVTQKPPNNNMPLGGVTRQIITNKNNCSVIIPSEVQVVSTNGKLKKDDNLQMSNATNVTLPDGTPLSLTIAQGADSNSEVYTVTYTSDGSALFGDNEVYNVNEAEMLLQTVDTMQLLGGADDNLKSEHSEQFEIMDSKIKLELEQQNSVDQQQQQQTLQQNSNQCQTTQTLPNFQHFHSKELIIQNPALINHQQIRSNTLSLPQDIKNQFASSLNSPIHSPLAYPTPPSSHENVTQTSPYIEDNHHFNDTQNIFFSESLISASSSRENENDKIMKLKNVLGDNSFDSNIKVEDLLNGTDPDAECDLREFAEASLSFLDEDQEFLNDSRNATSPLSESFFTSGIGTAEEVKEVLREVLTEDQLNLNCDNQGENIIDLYYFPGLSLQSQMMPNSEDPLLSSSPRDFGQQQKMQIPMQVQQQQPIASQHQHQHQHQHQHQHQQQQPQTQHIPQQQQHEQHEQHQHHHVQFSNQQQHLMQPQTVKISLDANTQSDATSSTEINQLILNLPTNIIQNPGNATSIETSSSSTAATLHYNVQNLPQVQNQSNNIQHQQQSQPQQQHQQHQQHQQLQQPLQPQFLTSANINSLNEALLQPIIYTSGTTDKMELKLDNNPNSTNPQTQNITNLNKPLEIVKTASPSAANHIIFSQQQSHASTSNASTNSLQPLSNQTNSILKRRLKGHTFLDSSSTHSYSKYQVLSPYKSKLRKPSRTHYTPAPILNPERKGHGLYCNVLKQIGCSLLTFDNFEDDFDDPVGLVDFSDESKVNLGSAYQAAIPAFIENACRSSFVEETAGCDLMWDPEVQRDDKILMRFIDLSKSSAVPLGSHSEEVALQALLKAHGNTATAVLSLLQTQSNSFQIKWSAPELEIFLKGLEKHGKEFSKIAKELGAKTTGECVQMYYFWKKLCVDYKVTHLKTETPPQNHANDPKPYVCEIPDCSASFSSKAALHGHTRIHTYGRNAHNNQHSNNHAGGASATATATNTNANNPQGAASHSNTHPMHNNSQSSNNNPANPNQKDNNTNKDNIEFPCKVCGKVFNKIKSRSAHMKTHRATDNETTVQTTNNQNQIIHQQQQQQQQQQQLTQQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00921633;
90% Identity: iTF_00655266;
80% Identity: iTF_00655266;