Esuc003456.1
Basic Information
- Insect
- Epicampocera succincta
- Gene Symbol
- -
- Assembly
- GCA_932527255.1
- Location
- CAKOBP010000014.1:5704790-5709474[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.2 1.4e+02 3.3 2.1 2 23 444 465 443 465 0.95 2 17 0.0031 0.2 12.3 2.4 2 19 510 527 509 529 0.95 3 17 0.12 7.6 7.3 0.6 2 23 571 593 570 593 0.94 4 17 0.11 7 7.4 0.6 5 23 603 621 600 621 0.93 5 17 0.002 0.13 12.9 0.6 1 23 627 650 627 650 0.95 6 17 0.015 0.95 10.2 6.3 2 21 658 677 657 679 0.94 7 17 0.3 19 6.0 0.1 1 20 688 707 688 709 0.92 8 17 0.48 31 5.4 3.8 1 22 729 750 729 753 0.91 9 17 0.0032 0.21 12.3 3.8 1 23 758 780 758 780 0.96 10 17 0.44 29 5.5 0.2 1 23 796 821 796 821 0.96 11 17 0.018 1.2 9.8 1.8 1 23 832 855 832 855 0.96 12 17 2.6e-05 0.0017 18.8 4.0 2 23 861 883 860 883 0.96 13 17 0.00032 0.021 15.4 2.3 2 23 887 909 886 909 0.95 14 17 0.14 8.8 7.1 5.2 1 23 915 938 915 938 0.94 15 17 0.00049 0.032 14.8 0.3 1 23 943 965 943 965 0.98 16 17 0.0002 0.013 16.0 3.4 1 23 971 993 971 993 0.98 17 17 0.44 29 5.5 0.3 5 23 1009 1028 999 1028 0.90
Sequence Information
- Coding Sequence
- ATGGCGGTTAATGTTTCCACAATCACAAGTGTTTGTGTATATTGTAAAGCAAACTCGAATTTGGCTATTGAACAGGATTTTCATGAAATCTATGATGAAGTGGGTCTGGAACTGCAGTTGCCTTCCCTAGTGGAAACATATTTCCAAATCAAAGTAAAAAATGAGGGTAAAAAATATTTGTGTGACGATTGCGTCAATCGCTTAATAGAATTGTATGATTTGCAAGAGCATGCCAAAGAGGAAAGTGATAAGGCAGTTGTACAACTCGAAAAAGAAAATACTACGGATGCGGAACAAATATCTTTTCTGGAACGAGAAAAATGCGAACAGAGTGGCTTAGTAATCGACAGTATATATCAATTAGAAGTCCAAAATGAAGGAGAATATAAAAGTTCAACTAATTCGAGTCCTGAAATTATTGTACACAAAGAATTTTCAGTTGAACGTAGAAATTTGAAACCTAAATCTGTAGAAATAAGAAGTGATGGTGAAAATTTCTATCAGCGGACTGCAATAGAAAAAGTCAAGAATTATGAGGAGGAAAATGTTAAAGCTGCAGTATTTACTTTGGAACACGTTGAAGTAGCTGATAGTGATATTGATAACAATTTTAGTGATGAAGATTTCACCGTCAACAATGTCATTGAAGAGTCACAAGAATTCACTAATTTAACTTCTAATTCCAGTATAGAAATATCGAATTCAAGTGAGGCTGAGAGCCAAGAAGAATTTATTGAAGAAATAGGAAATAACAGCACCGAAGTAAATAATTTATTGAAAATTGAAGATATCGAAGTTCACACGCAAATATCTGCCACAGAAGATCAGTTGTCCGAAACAGAAATTGAAAGTGTTAATATTGACCATGATGATGTTCTCTATGAACAACTGGACGAAAGTTTAATTGACAATGAACAAATTGATGAAAATAGAGACGTGGTAATGGCAGACTTGTTTCATTACCACGACGATGATAATCATAATGAAGCTTCTACAAAGACTGATCAAAAAAGAGCTTATAGTGAAAAAGACTTTATAAATATTAGATCTATCTCGACAGAAATTGATAGTAAAGATATTAAAAAAGCAGCTATTTTAGTTCTCAATACAAAGGAAGCAGACTGTCAATTAAGTGTCACAGAAGACCACGAAGAAGAAGTTTTTGAAAAATCCCAAAATGAAATTTTAAACGATTCATTGTCTTTAGAGGAGGAGTATTTAATCGAAGAAATATTATGCTCTGAAGAATACGATGAAATAGATTTAAACGAGTATTTGGAAAAAGTGTTGTTAACAAAATTTCAAGACTTGGAATTAAAGTGGGAGATAGAATGCAAAATATGCATGACCATCTATAACACTTTTGAAGAACTTTTACATCATTCGTGTGTTCACGATTTCCAAGAAGAGCAACACTTCCCTTGTATTGTTGAAAATTGTGTTCAAAATGCAGATAACTTGCCGGCCCTGGCGAGGCATTTAATTCTCGTCCATTATGATAAACTAGAAAGTGTATCTATATATGGCAAGTGCCCAGAGTGTCAAAAAACATTTTCAAATATTTTTGATTTTAATAAACATTCATGTTGCCGCAGCATAAAAAGAAAAACTGGATCTCCAAACTATTGTCAATACTGTGATATGGATTTTCAGTCTTTGAAAAGGTACGTGTTTCATATGCAGTTTCATTTAACAAATCGTCGTCCCAAAGTCTGCTTGCTGTGCGGTGTTTTATTTAAGACATCTAATGAGTTTTTCGAACACACACAATATCAACACGTATCTGAAACTGCCATGGCCTGCATTAAATGTGATCGTTTTTTCAAGGATAAAGATGTGTTTGACCAACACATAAGCTCGCATGATAGAAAATACCAATACAGCTGCACTGTTTGTCCTAAAAAGTACACCAACAAATTTATTTTAGCTCAACACATGGACATTTATCATTCGAATAGGCCTAGTACGAAGAAGTGTAAACACTGTGACAAAGAGTTTGTTAGCAGAGTATCGTATCGAAATCACTTAAAATGTCATGATACCGATGTTGAAGTGGAAGCGTTTATATGCTCAACATGTGGCATTGTGACCAGCAGTATGGAAAATATCAAGTACCATACTGAATCTGATGAAGATTCCTCGTGTTTTTCATCCCAAATTGAGGAAAGGATCATTAGTTTGGCTTATACATGTGAAAACTGTTCCCTGGATTATCATACAATAAAACATCTAAAACAACATCGTCTTAGTACAGATCATAGCGATGATTTCTTTGTTTGTGGAATATGCCGACAAAGCTTTAAAACGCTACGGCATATGCGCAACCATTACACCAATCACAAGGACTTGGAGGAGTGGAAAGCCTCATTTCCTATAACACGTTATTTTGTGTGTAACATTGGGGATTGCCAAGAGTTCTATCCAATTTGGACCACATTGTACTATCACAAAAAGCGTCCCCATAAAACAAATAAATCTGGTTATACTGACGAATTTAAGTGTCAATTCTGTCAACAAATTTGCTCATCGAAAATGTCCTTGGCGGTGCATGTAGCTAGAAGCCACAACAACTCAAATGTTAAATGTTCCTATTGCAAACGGAGCTTTAAATCCCAAAAACATCTGCAAGAACACATTGACAAATATCACACACCGGTAGAATGTGATATTTGCTTTAAAAAATTTAAGCATCGTCGCAATTTGGAGTCCCACAATAATATGGTGCATCTCAGTATAAAACGTTACTTTTGCAAGCATTGCGGAAAGGGATATTTTCATAAGAGTGAGAAGGATATACACGAAAAGAAAGTGCATCCCAAAGTGTCCTACAATTGTGAATTGTGCAATTTTGTCACTACGTATCCTGAATCTTTGCAAGTTCATATGGACAAGCATAATAATCAGTTGAAATTCAAGTGCACCATTTGTGGCAAAGCCTTTGGGCGCAAACAACTTTTACAGTGTCACTTAAAAAGACATTTGAATAAAAAAGATTTTATTTGCATGGAGTATTTAAAGGAGGAAGGCTGTGATTCTACATTTTTAACTTACAATCTTTTGAAAAAGCACATTCAAACCAAACATCCAAACTCAACTTATAGCAATAATCTGAGAGACGATGATAAGAACAAACTAGTTCTTAGAAATCATACAGATGCGGATGAAATAGAAGACAATTCCATTGATTTGTGGATGGATGACGGCACCACCAGCGAGAACAGTACTAATATTTTAACGCACAACAACAACGATGACTTGGAACAAGATCCCATTGAGATGGTTTTCGAAGAAGATGATGTGGAATATGATGAGCAATAA
- Protein Sequence
- MAVNVSTITSVCVYCKANSNLAIEQDFHEIYDEVGLELQLPSLVETYFQIKVKNEGKKYLCDDCVNRLIELYDLQEHAKEESDKAVVQLEKENTTDAEQISFLEREKCEQSGLVIDSIYQLEVQNEGEYKSSTNSSPEIIVHKEFSVERRNLKPKSVEIRSDGENFYQRTAIEKVKNYEEENVKAAVFTLEHVEVADSDIDNNFSDEDFTVNNVIEESQEFTNLTSNSSIEISNSSEAESQEEFIEEIGNNSTEVNNLLKIEDIEVHTQISATEDQLSETEIESVNIDHDDVLYEQLDESLIDNEQIDENRDVVMADLFHYHDDDNHNEASTKTDQKRAYSEKDFINIRSISTEIDSKDIKKAAILVLNTKEADCQLSVTEDHEEEVFEKSQNEILNDSLSLEEEYLIEEILCSEEYDEIDLNEYLEKVLLTKFQDLELKWEIECKICMTIYNTFEELLHHSCVHDFQEEQHFPCIVENCVQNADNLPALARHLILVHYDKLESVSIYGKCPECQKTFSNIFDFNKHSCCRSIKRKTGSPNYCQYCDMDFQSLKRYVFHMQFHLTNRRPKVCLLCGVLFKTSNEFFEHTQYQHVSETAMACIKCDRFFKDKDVFDQHISSHDRKYQYSCTVCPKKYTNKFILAQHMDIYHSNRPSTKKCKHCDKEFVSRVSYRNHLKCHDTDVEVEAFICSTCGIVTSSMENIKYHTESDEDSSCFSSQIEERIISLAYTCENCSLDYHTIKHLKQHRLSTDHSDDFFVCGICRQSFKTLRHMRNHYTNHKDLEEWKASFPITRYFVCNIGDCQEFYPIWTTLYYHKKRPHKTNKSGYTDEFKCQFCQQICSSKMSLAVHVARSHNNSNVKCSYCKRSFKSQKHLQEHIDKYHTPVECDICFKKFKHRRNLESHNNMVHLSIKRYFCKHCGKGYFHKSEKDIHEKKVHPKVSYNCELCNFVTTYPESLQVHMDKHNNQLKFKCTICGKAFGRKQLLQCHLKRHLNKKDFICMEYLKEEGCDSTFLTYNLLKKHIQTKHPNSTYSNNLRDDDKNKLVLRNHTDADEIEDNSIDLWMDDGTTSENSTNILTHNNNDDLEQDPIEMVFEEDDVEYDEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -