Basic Information

Insect: Epicampocera succincta
Gene Symbol: Sry-delta
Assembly: GCA_932527255.1
Location: CAKOBP010000074.1:2759985-2761229[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0059 0.39 11.4 0.5 2 23 186 208 185 208 0.93

2 7 9.5e-05 0.0062 17.0 0.2 1 23 213 235 213 235 0.98

3 7 2.7e-06 0.00017 21.9 0.9 2 23 242 263 242 263 0.97

4 7 0.0005 0.033 14.8 1.2 1 23 269 291 269 291 0.98

5 7 8.9e-05 0.0058 17.1 2.6 2 23 299 320 298 320 0.96

6 7 8.6e-06 0.00056 20.3 3.6 1 23 327 349 327 349 0.98

7 7 0.0089 0.58 10.8 0.1 3 23 388 409 387 409 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0059	0.39	11.4	0.5	2	23	186	208	185	208	0.93
2	7	9.5e-05	0.0062	17.0	0.2	1	23	213	235	213	235	0.98
3	7	2.7e-06	0.00017	21.9	0.9	2	23	242	263	242	263	0.97
4	7	0.0005	0.033	14.8	1.2	1	23	269	291	269	291	0.98
5	7	8.9e-05	0.0058	17.1	2.6	2	23	299	320	298	320	0.96
6	7	8.6e-06	0.00056	20.3	3.6	1	23	327	349	327	349	0.98
7	7	0.0089	0.58	10.8	0.1	3	23	388	409	387	409	0.93

Sequence Information

Coding Sequence: ATGGAAACCGTCATTTCGTGCTTTTTGTGCGGAAATGATACCGCAAAGTTAAATACGGAATTTTATAATATTCAATCTTCTGTTGTGCCAGCATCACAAAAGCCGATTCATGTTGTCCTCCAGCACCTGGCAAACTGTATCAAATACAAACTAATATTTCAAAGCGAAACCTTTATTTGCGCAGATTGTTTTAAAGAGATGTCTGATTATGACGATTTAATGTTAAACCTTCTTTCATCACAAAAACGTCTTACTGTTTTGTTGCAAAATGCTTTAATGGACAAACAGGAAGAGGAACCCCCTTTTGTCGAAGATGAAAATGAACAGATAATGGACTTCGAATTTGAAGACGATGAGCAGGATCCAAGTCTTGTGGATGCTTCGAATCCAAACCTTGACACCAAGGAGGAGCTTATTGAAGTTGATCAATACACTATTATTGAAGAAGAAACGTCTGTCGAAAATCAAGCCGAAGAATGTAGTGTAAGAAGCGACACCAATAGCATTTCACAAGATTCTTCAAATACAAAAATTGGTCGCAAGAGGCAAAGCTTAGAGTGCGTTGTGTGCGGCGCAATTTTAAAATCGAAATTTCTTCTTCAAAATCATATGAGCGAGTGTCATAACGTAAAAAGATTTTCTTGTAAAATTTGCGGAGTAACTAGAAAAGATGAAGAGTATCTGGAACTACATATGAATATACATGAAGGGAAGACAGAAAACGAATGCCGGTACTGCCCCAAGCGATTCACCCGTCCTGTTAATACACTGAGGCATATGCGGATCCACTGGGATAAAAAAAAGTTTCAGTGCGAAAAATGCGGTGAACGATTTTCTCTTGACAACATGTTGTACAATCATCGTTTAAGACATGAAGCCGAAGAGAATCCGCTAATTTGTAGTATTTGCAATCAATCTTTCAAATCACGAAAAACATATACCCATCACCTGCTCATACATCAAGAAAATCGACCACGATATCATTGTGATTTATGTCCAAAATCATTTACGGAGCGCTATACCCTAAAAATGCATCTCAAAACACATGTTGGAGAGAAATCCTGTGAAAGCCCTTCAAGTTCGATTGCTAGTATAAAATCTTGCCAAGAAGAAACCATTGGCATTTTAGAGGAAACTGATAGTTATGACAGTGACAACATATGTGTTATATGCAATAAGAAGTATGATGAAAAAGTTGGTTTGGAACAACATTTGCAGGATGCACATGATGTTATTCTCAAATAA
Protein Sequence: METVISCFLCGNDTAKLNTEFYNIQSSVVPASQKPIHVVLQHLANCIKYKLIFQSETFICADCFKEMSDYDDLMLNLLSSQKRLTVLLQNALMDKQEEEPPFVEDENEQIMDFEFEDDEQDPSLVDASNPNLDTKEELIEVDQYTIIEEETSVENQAEECSVRSDTNSISQDSSNTKIGRKRQSLECVVCGAILKSKFLLQNHMSECHNVKRFSCKICGVTRKDEEYLELHMNIHEGKTENECRYCPKRFTRPVNTLRHMRIHWDKKKFQCEKCGERFSLDNMLYNHRLRHEAEENPLICSICNQSFKSRKTYTHHLLIHQENRPRYHCDLCPKSFTERYTLKMHLKTHVGEKSCESPSSSIASIKSCQEETIGILEETDSYDSDNICVICNKKYDEKVGLEQHLQDAHDVILK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01376931;
90% Identity: -
80% Identity: -