Esuc000814.1
Basic Information
- Insect
- Epicampocera succincta
- Gene Symbol
- -
- Assembly
- GCA_932527255.1
- Location
- CAKOBP010000003.1:7754197-7757606[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.16 10 6.9 3.6 2 23 117 139 116 139 0.94 2 14 0.001 0.066 13.8 0.1 2 23 150 172 149 172 0.96 3 14 0.013 0.87 10.3 2.7 1 23 178 200 178 200 0.94 4 14 0.00017 0.011 16.3 2.2 1 23 206 228 206 228 0.98 5 14 0.055 3.6 8.4 0.2 3 23 236 256 235 256 0.97 6 14 0.016 1.1 10.0 0.1 2 23 262 284 261 284 0.92 7 14 0.059 3.9 8.2 7.9 1 23 290 313 290 313 0.98 8 14 0.13 8.3 7.2 1.4 2 23 384 406 383 406 0.92 9 14 0.00021 0.014 16.0 0.9 2 23 417 439 416 439 0.96 10 14 0.00043 0.028 15.0 1.3 1 23 445 467 445 467 0.98 11 14 0.45 29 5.5 5.1 1 23 473 495 473 495 0.96 12 14 0.0063 0.41 11.3 0.1 3 23 503 523 502 523 0.98 13 14 3.5e-05 0.0023 18.4 0.2 2 23 529 551 528 551 0.94 14 14 0.0093 0.61 10.8 6.0 1 23 557 579 557 579 0.99
Sequence Information
- Coding Sequence
- ATGGCGTGCCTTAACACCTTTAGAGCAATTGAAGAAAATACGGCCGAACGAAATCGCTGCAAACGAAAAGGAACATACAAAAACACATTGAAAAATCAAATAAAATGTCGCAAAATATCTGGTAACTCCAGGAAGACAAAAACTCGTAACTCTCTGAACACGAAAGAGCTTGAAAAAATTATTAAAGTTGAAGAAATTGATAATCTTGGCGATGCCAGCTCAAAGTTTCCGCCAACGTTATTCACTTTACAGGAGAATGTTAAAAATGATAGCGGTCAGATCGATAAGAAAGTTCAGAAAACTATTAAATTTGAAAAGTCCGATGACATCGACGTCAAAGAATCGATTGTTTGTGCAAAATGCCCGCAAACGTTCTGCACCCTATACGAGCATCAGAGACACCTATACAAAAATCATGCTTCGAAGGAGTTAGACGATGACTTACTTAAATGCCCCATTTGTGCAATAAAGTTGAGCCAAAAATCTGTTCTCATCAAACACATAAAAATTATTCACGATAAAATTAAGCCGTATAAATGTACTCAATGTACAAAAACCTTTGGATCAGCAACTGCCAAAAGCCATCATGAACTTTCACATTCAGACATCTTTGCCTATCCTTGTAATCACTGTAACAACCGATTTCGCGTTCTCAGCAAACTAAAGCAGCACTTGGAAATACACACTACCAAACCGGAACTTTTATGTGTTATTTGTAAAAGAGGTCAAAAATCACAGGAAGAGTTGGAGGCCCATATAAAAAACCACGAAGATAATCGTTTGCAGTGCCCTTCGTGCGGCAAGTTGTTTGGGAAAAGGCAGAACCTCGATGGGCATTACAATGCCGTTCATTTAAAACTTAAACCTTTTAAATGTGACTTTTGTGACCTCTGTTTTGCTGATTGCAAAACAAAACGCAGGCATGAAAGAAGACGTCATAAGAACTTTTCTGTATCTGCAATAGAAACTGCTGGAAAAGATACAACAAAACGAAGCCGTCGGAAACAGAAAGGATCAAGTGAAAACTCAGTACTGAAACATTTGAAACGAGCTAGAAAAGCTAAACAGGTCAAGCATATTAAAGTTGAAAAAGTTGAAGAAAAGGATGAAATAGGAAAAATTGAAGATAGAGGAGCAAGTGGACCGATTGTTTGCTCAAAGTGCCCGCAAACGTTTTTTACTTTATACGCCCATTTAAAACACCAAAAAGAAGATCATTCTTCAGAGGAGTTTGATGATGAAAAAGGCAAATGCCCGCTTTGTTCAAAAAAATTCAAAAACAAATTTTATGTAATGGACCACATAAAAAATGTGCACGATAAACTTAAACCGTTCAAGTGCTCTCATTGTGCAAAAACGTTTGCAACAGCTGGTGCCCGAAAAAATCATGAAATTACACACACAGACGAATTTCCTCATCAGTGTGAATTCTGCGAAAGACGCTTTCGTCTTTTGGGTAAATTAAAGTGTCATTTACAAATACATACAACCAAGCCCGAACTTTTATGCCCTATCTGCAAGAGAGGTCAAAAATCACAGGAGGAGTTGGAAGCTCACATAAAAAATCACGAGGATAACCGCTTACAGTGCCCCTCGTGCGGCAAACTGTTTACGAGAAGACCAAACCTGAATGAACATTACAACGCCGTGCATCTCAAACTAAAACCTTATAAATGCCAATTTTGCGATCAGTGCTTTGGTGATCGGAAATCCAGACGCACACACGAAAGAAGGCATCAAAAAAAAGATACTTCCGCATCTTGA
- Protein Sequence
- MACLNTFRAIEENTAERNRCKRKGTYKNTLKNQIKCRKISGNSRKTKTRNSLNTKELEKIIKVEEIDNLGDASSKFPPTLFTLQENVKNDSGQIDKKVQKTIKFEKSDDIDVKESIVCAKCPQTFCTLYEHQRHLYKNHASKELDDDLLKCPICAIKLSQKSVLIKHIKIIHDKIKPYKCTQCTKTFGSATAKSHHELSHSDIFAYPCNHCNNRFRVLSKLKQHLEIHTTKPELLCVICKRGQKSQEELEAHIKNHEDNRLQCPSCGKLFGKRQNLDGHYNAVHLKLKPFKCDFCDLCFADCKTKRRHERRRHKNFSVSAIETAGKDTTKRSRRKQKGSSENSVLKHLKRARKAKQVKHIKVEKVEEKDEIGKIEDRGASGPIVCSKCPQTFFTLYAHLKHQKEDHSSEEFDDEKGKCPLCSKKFKNKFYVMDHIKNVHDKLKPFKCSHCAKTFATAGARKNHEITHTDEFPHQCEFCERRFRLLGKLKCHLQIHTTKPELLCPICKRGQKSQEELEAHIKNHEDNRLQCPSCGKLFTRRPNLNEHYNAVHLKLKPYKCQFCDQCFGDRKSRRTHERRHQKKDTSAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -