Esuc000914.1
Basic Information
- Insect
- Epicampocera succincta
- Gene Symbol
- -
- Assembly
- GCA_932527255.1
- Location
- CAKOBP010000003.1:9111038-9113494[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00027 0.018 15.6 3.6 2 23 148 169 147 169 0.96 2 10 3.6 2.4e+02 2.6 3.8 1 23 174 196 174 196 0.94 3 10 1.2e-05 0.00076 19.9 2.1 1 23 202 225 202 225 0.97 4 10 1.9e-05 0.0013 19.2 0.1 2 23 232 253 231 253 0.96 5 10 0.0003 0.02 15.5 4.1 1 23 259 281 259 282 0.96 6 10 4.4e-05 0.0029 18.1 0.7 2 23 304 325 303 325 0.97 7 10 5.3e-06 0.00034 21.0 1.7 1 23 331 353 331 353 0.98 8 10 3.3e-05 0.0021 18.5 2.8 1 23 359 381 359 381 0.97 9 10 1.5e-05 0.00098 19.6 1.3 1 23 388 410 388 410 0.97 10 10 0.0042 0.27 11.9 0.3 1 23 416 439 416 439 0.92
Sequence Information
- Coding Sequence
- ATGCAAAGAAATCAAAATGTCAGCTTTCAAATGATGGATTCATCGAACGAAGAAAGCAGTAGCGAGTACATCGACTGCGGAGAAGTTGACCTCTCAGATGATAATTTTGAAAGTGTGAATACAGATGCTTCTAAAAAAGAAGCATTTATGCATAACACAGCTACAAACCACAAACATTGTTATCAACAGAATACCAGCTTAGGAGAGCTAAAGTCAGAGGATGCTGGGCTTAGAAGGGATAAAAACGATACCAATGAGATTTTAAGTTACGAAAGCGGAGTTAGTTGTGCAACAGAAGTAAAGGAACTAACTGAGATTTTAATTGCATCAAAATATTGCAGTATAGATTTGCTGTCATCATCTAGTTCCTCATCCTGTAATGGTTGCGATGATTCAGTCAACCAAGAATTTAGAAGTAAATTAAAAGATTCAAGTTTCTTAACTTGTGATACTTGTCATGAAGTTTTCACCAACAATCAAGATTACAGAATACATATTAAACATCATGGCTTACAAAGGTATCAATGCATTCAGTGTTGCAAATTTTTTCCCTCTCGGTTTCGTTTAAAGCGACATGAGGAAATTCACAAGGATACACCGTTCCATCAGTGTTCTTATTGTAATAGAAATTATCGAGCTTTGTATAATCTAGAACGACATATCCGCTCTGCCCATTCAGGAAAAAGAAACTGGGAATGCAATGTTTGCAATGTTAGTTTTTCTCGCGTCGATGCCCTGAAGCGTCATTTACTACTCCATTCAGATGAGAAGAAATTTAAATGCGCATTGTGTTCACAAAGTTTCAAAACTAAAGATTATTTGTATGCGCATAATAAAAGCCACCATGTGGAGAAACCAGATTGTACAAAAAGAAACCCAAAAATTAAGAAAGATAAAAACTATAAAAATCAGTGTGGTTATTGCGGTAAACTTTTCAAGTCTTCATTTGCGTTTAAAAATCATTTGTTGATTCACGCTAATGAAAAACCACACAAATGTGATACCTGTAGTAAAACCTTCAGAACAATTGCAGCCCTTACAATACATCAACGTATTCATGATGATTATCGACCATATCAATGCGATTTATGTTTAAAAAGCTTTAGACAAACTTCACATTTAAAGGAACATAGAGCTTTACACTTAGACGATGCGCCAAAGCACGTCTGCTCTATTTGTAAAGCAACATTTTCAAAAAAAGGCAACTTAAAGATACACACGCTAATTCATGCAAAAGAGAAAGCGTTTAAATGCGCAGATTGCTCTGCTGAATTTAGTTTTATGTATTTGCTTACCCGGCATGCAGGCCGAGTTCATAGCAGAAGCGTGCATGAAGACTGTGCGTTAAATGATGACATTGATGATACATGGGAAACAGATGTTGAAATTGTTGAAATAAAAAATAATGATGTCTTGCAAAACGAAATGTACCATTATATTGATACTGTAGCAGATGATAATTGTGATGAATTCTAA
- Protein Sequence
- MQRNQNVSFQMMDSSNEESSSEYIDCGEVDLSDDNFESVNTDASKKEAFMHNTATNHKHCYQQNTSLGELKSEDAGLRRDKNDTNEILSYESGVSCATEVKELTEILIASKYCSIDLLSSSSSSSCNGCDDSVNQEFRSKLKDSSFLTCDTCHEVFTNNQDYRIHIKHHGLQRYQCIQCCKFFPSRFRLKRHEEIHKDTPFHQCSYCNRNYRALYNLERHIRSAHSGKRNWECNVCNVSFSRVDALKRHLLLHSDEKKFKCALCSQSFKTKDYLYAHNKSHHVEKPDCTKRNPKIKKDKNYKNQCGYCGKLFKSSFAFKNHLLIHANEKPHKCDTCSKTFRTIAALTIHQRIHDDYRPYQCDLCLKSFRQTSHLKEHRALHLDDAPKHVCSICKATFSKKGNLKIHTLIHAKEKAFKCADCSAEFSFMYLLTRHAGRVHSRSVHEDCALNDDIDDTWETDVEIVEIKNNDVLQNEMYHYIDTVADDNCDEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -