Esuc004477.2
Basic Information
- Insect
- Epicampocera succincta
- Gene Symbol
- -
- Assembly
- GCA_932527255.1
- Location
- CAKOBP010000016.1:8161572-8171434[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.5 3.6e+02 2.1 0.3 11 23 304 316 304 316 0.89 2 12 6e-06 0.00039 20.8 1.3 1 23 578 600 578 600 0.97 3 12 0.00012 0.0075 16.8 0.5 1 23 606 628 606 628 0.97 4 12 5.1e-05 0.0033 17.9 0.6 1 23 634 656 634 656 0.98 5 12 3.8e-06 0.00025 21.4 3.0 1 23 662 684 662 684 0.97 6 12 5.1e-05 0.0033 17.9 4.7 1 23 690 712 690 712 0.99 7 12 8.9e-05 0.0058 17.1 5.6 1 23 718 740 718 740 0.97 8 12 4.4e-07 2.8e-05 24.4 4.3 1 23 746 768 746 768 0.98 9 12 1.6e-07 1.1e-05 25.7 2.4 1 23 774 796 774 796 0.97 10 12 0.0014 0.091 13.4 5.4 1 21 802 822 802 830 0.92 11 12 0.00037 0.024 15.2 4.5 1 23 840 862 840 862 0.98 12 12 3.1e-05 0.002 18.6 1.4 1 23 868 891 868 891 0.95
Sequence Information
- Coding Sequence
- ATGAATACGGACAATGCAATTTCAAATGCAACAACTCACGGTGAGTCAACAACAGCGGCAACATTATCGAATTCAACAAAAACAACTGTTTCGTCCGTGGCAACATCTAATGGCTATGATCCTCACCAGCAAAATCGTCATTCACCTTTGCAACAACAGACTCAATTAAATGAGTCGCCTTCTATTTTAACTGTTGTCCCAAAATCAAGTCAAATTTCTCAGCAATTCATGTCAACGTCAAGTATAGCCAGTAACCATAATGCTGGTGATAGCTCGGTTATTACTCATATAGTTGCTTCAAGTTCAACACAATCTCAGGTGGCGGCGGTACCGCCGTCTACTATTGCTGTTGAACTCAAGCATGTTGTTACGCATCAAAACACTGTAACTTCAACAAATTCTTCAAGATCTGGAGACGTATGTTCTGGTCCCATTGCGGTACCGATGACCACCACGTTGGTGTCTGCTCATAATCCAAATTTGTTAAATCATCACCACCATCAGCAGCATGCTCACCACCACGCAAACCAGGCTTCTGGCGCTCCATTATTATTAAGTAGTTGTTGTGAACCTTCAGCTCCAACATCGGCCGCCGGAACACTTTTACCCAATAATCCACAAAATTTGGGCAAATATTGGGTCGTGACGAATTTGTTTCAAGGGGCGCCAGGTCAACCGGCTCAGTATAACGAGGGAGGTGTTGTAGCCCACACACAAACATCTATACCTGGAGTGCCTTCATCGACATTAGTACGTGCTATACCAACAACTGCTGGCAGCACTACAGCGGTAACGAAAACAGAAACAGTTTCTAGCAGCGCGGGAACGCTGCAAATACCACAAACTCAAATGTTATCGCAAGCATCTATAACACAACAACTGCCGAATGGCACAATAATCACAACACAGTCACAGCAGCAGCAGCTAGAAAGACATATGGCCGAACATCAACAACAGCAGCACCAGTTGCACGTGCACGCCTTAAATAATACAGATGATAATCGTCAGCAACAACAGCAATTAAATCAACAGCAACATGTTGCGGTACTTCAGTCCAGCGAAGCCATAAAAGATGAAAAACCTTTCGCCTCTAGTGGCAAAACAGCCGCAGCAAATCAACAAATTATTATGCAGCATATATCAGCAGCAACATCATCAGGTAATCCGACTACCTCGGGAGCTACCACAATTACACTAGGTACTCCTAAAACGGAAATAAAAGACGATGGTAGCGTAGTTATGAGTGGAAAACTACATTCTGGCTTTGAAATGTATAAAGTAAATATAGAAGATATATCGCAATTATTTACCTATCATGAAGTATTCGGTAAGATACACGGAGATGTTATGAATCATCCGCTTACCGCAAGCCATACATCGCTGCCAGCAACACCGAGCAGTAATATTTCTGTAACTGTTTCAGCGGCCACTACAAGTGCCACTGAGACAAATAATACAACAGGAGTTCCTGTGGTAGCTAATAGCGCCGCAATAACGGAATCAGCTACAACTAGTTCAGTGGCTGCGGGCGTTGTTGCTACAACCAGCACTGCTGCCAACCTAACAACATCTATTGCAACAAATTCTAATTCTGTAGCAACTGCTACCTCTACGAATTCTGGTGTAGCACCAGTTGGTTTGTTAATGCCAAAAATGGAGGGTGGTATTGCTAACGTTGAACAGAACACAGTCACTTTAGCACCGGATGGCACAGTGGTGTCCACCGGTGAACATGTGTGCGATATATGTGGAAAAATGTTTGCATTTCGTTATCAATTAATCGTACACCGCCGCTACCACACTGAACGAAAACCGTTCAATTGTCAAGTGTGTGGCCAGGGTTTTTTTACTTCTCAGGATCTAACACGGCATGGAAAGATTCATATTGGTGGGCCGATGTTTACTTGTTTAGTGTGTTTTAATGTTTTTGCCAACAATGCCTCTTTGGAACGTCATATGAAACGTCATTCAACAGATAAGCCGTTTGCTTGCACTATATGTCAAAAGACTTTTGCCCGCAAAGAACATTTGGAAAATcattttcgttcgcataccggtgaaactccgtttcgttgtcaatattgtgctaaaacgtttacacgcaaagagcacatggttaatcatgttcgtaaacatacaggagagacaccacatcgttgcgaaatctgcaaaaaatcttttacgcgaaaAGAACATTATGTCAACCACTATATGTGGCATACTGGCCAAACCCCACatcaatgtgaagtatgtggcaaaaagtatacacgcaaggaacacttagccaatcatatgcgttcgcatacgaatgatacaccttttcgatgtgaaatttgtggaaaaagttttagtcgtaaagagcattttactaatcatatattatggcatacaggcgaaactcctcatcgctgtgatttctgttcgaaaacgtttacacgtaaggaacatttgctgaatcatggtaatttaCTCTTCCATCAACGTAGTCACACCAAGGGTCAAGAAATGGAGAGACCATTTTCGTGTGAAAAGTGTCCCAAAACGTTTATATGTAAAGGTCATTTGGTCTCGCACATGCGTTCCCATTCTGGCGAAAAACCACACGCTTGTACTTTATGCAGTAAAGCGTTTGTGGAAAGAGGTAATTTGAAACGTCACATGAAATTGAATCACCCAAACGCCCCAATGCCACCACCCCCAGTGCCACATCCAGTTATACCAGCAGGAGTTCTGCCTCAAATCAAGCAGGAAATAAAACCAGTCATCAGTGAAATAGACCCGCTTcaaataacagcaccaacaatgcatacaatacaacaaataacagcaggaccatcgccaaataccgtgcaactaacagcaggattgacgccattagtgacgtccactataacatcgcatgcctcacagaaacaggtatcacagtcccaagctcaagtacagcaaaatcccttgcagcaacagcaagcgcagcaacaacaacagcaagttgttgcaacactacaacaacaacagcagcagcagcagcagcaggtgcaacagcagcaagcaacagctcatcaacaggctttacagcaacagcaacaacagcatcagcaaaatcaattattgcagttgtcgatacagcaggcagctgctgctgccgccgctcatcagcaaattcaacagcagcatcaagaccaacaacaccaacatcatcaccaacaacagcagcagcagcagcaacaacagcagcaacaggcacaacagcaatctcaccatcaacaacaatcagcttcaacagttgctgtcaatccaagtgtccatcaacagcagcagcaacaacaacaacagtcatctcaacagcaaacacaagcccaacagcagccaccacCTGTGCCAATCTCCTTAATACAATCTGATCAGGAAGCGTTGGCGCGCGCCACTATGCAACAATTGCAGCATATGCCCGCCAATGTTGAACAACATCCAGTTGTGTACTAA
- Protein Sequence
- MNTDNAISNATTHGESTTAATLSNSTKTTVSSVATSNGYDPHQQNRHSPLQQQTQLNESPSILTVVPKSSQISQQFMSTSSIASNHNAGDSSVITHIVASSSTQSQVAAVPPSTIAVELKHVVTHQNTVTSTNSSRSGDVCSGPIAVPMTTTLVSAHNPNLLNHHHHQQHAHHHANQASGAPLLLSSCCEPSAPTSAAGTLLPNNPQNLGKYWVVTNLFQGAPGQPAQYNEGGVVAHTQTSIPGVPSSTLVRAIPTTAGSTTAVTKTETVSSSAGTLQIPQTQMLSQASITQQLPNGTIITTQSQQQQLERHMAEHQQQQHQLHVHALNNTDDNRQQQQQLNQQQHVAVLQSSEAIKDEKPFASSGKTAAANQQIIMQHISAATSSGNPTTSGATTITLGTPKTEIKDDGSVVMSGKLHSGFEMYKVNIEDISQLFTYHEVFGKIHGDVMNHPLTASHTSLPATPSSNISVTVSAATTSATETNNTTGVPVVANSAAITESATTSSVAAGVVATTSTAANLTTSIATNSNSVATATSTNSGVAPVGLLMPKMEGGIANVEQNTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKLNHPNAPMPPPPVPHPVIPAGVLPQIKQEIKPVISEIDPLQITAPTMHTIQQITAGPSPNTVQLTAGLTPLVTSTITSHASQKQVSQSQAQVQQNPLQQQQAQQQQQQVVATLQQQQQQQQQQVQQQQATAHQQALQQQQQQHQQNQLLQLSIQQAAAAAAAHQQIQQQHQDQQHQHHHQQQQQQQQQQQQQAQQQSHHQQQSASTVAVNPSVHQQQQQQQQQSSQQQTQAQQQPPPVPISLIQSDQEALARATMQQLQHMPANVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -