Esuc002686.1
Basic Information
- Insect
- Epicampocera succincta
- Gene Symbol
- -
- Assembly
- GCA_932527255.1
- Location
- CAKOBP010000011.1:2010756-2017377[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.87 10.3 1.9 1 23 358 381 358 381 0.91 2 12 0.00092 0.06 13.9 1.1 2 23 384 405 383 405 0.97 3 12 0.00064 0.042 14.4 0.2 1 23 412 434 412 434 0.98 4 12 5.7e-07 3.7e-05 24.0 0.9 1 23 440 462 440 462 0.99 5 12 0.00023 0.015 15.8 2.6 1 23 469 491 469 491 0.98 6 12 5e-06 0.00032 21.1 1.8 1 23 497 519 497 519 0.96 7 12 4.3e-05 0.0028 18.1 0.2 1 23 525 547 525 547 0.97 8 12 4e-05 0.0026 18.2 0.8 1 23 553 576 553 576 0.97 9 12 0.00055 0.036 14.6 1.8 1 23 582 605 582 605 0.95 10 12 7.1e-06 0.00046 20.6 1.3 1 23 611 633 611 633 0.98 11 12 9.5e-05 0.0061 17.1 0.5 1 23 639 661 639 661 0.96 12 12 0.0014 0.094 13.3 0.2 1 22 667 688 667 691 0.92
Sequence Information
- Coding Sequence
- ATGGAATCTGTTCGTTGCTATCTGTGTGACCATGAGTTTGTAGAGGGCGAAGAGCCATGGTTAATGTTCGAGCAACGTTTGCGTGAAGACGGACAAGTTGAGTGCTCTCTGGCCGATCTGTTGGGATCAATATTAAACAAACATTTGGAGGAAGCATTGGCTCACTCTACATTGCTTTGTGATTCTTGCAATGCTGACATTTTGGAATACGAGAATCTGGAAAAACAGTTTTCACAAATACGTGAACGGGTTTTAAGTTCTTATAAGGAGAATTCTACTATTCAGCACTTAAATAACTTACTAAATAGAAGTGCCATTAATAACGAAACATTGTCGCATCATGTAGACACAAGTACACTGCTTATGCCCGATGACGTTGATAATTTATCTAATTCGGAATATGCTGGTATCGCTGATATGGATTTGGTAGAAGAAATTCAAGATGAAGAAGTTGATCTGGAAGGCAGTGAAAATATTTGTGGGAAAGAAAATGAAAATTTAGCGGCGCACTCTGGAGACAGTTTTATTGGAAATGACAGTGCGGAGATTATGACAGATAATTTTGATTTCGCTGCCTTCAATGAACACGTTGCCCAAAACTCTTTACCTTCAGGTGTATTGAATATGTCAGATGGTCTTGTAAATTTAGAAGTTTCAGAGAAATCTATAGAAGTACAGGACATACCAATCGGAGGACAAGATATTATTATATACGACGTTAATTCGGAACACATTCAAGAATGCGACTTAATCGTTCAGCAAGACAACTGTGACGATATTAAAAATTATGCAAACTCCGAAGATGAGGACCTCAACTTTGTAATTAGTGCAGACATTTTTAAAAACAAAGCCAGCTCGGAGAATTCGCATGAAACAACAGGAGCTGATATTTTAGCGATTTCTAACGACAGCCAAGAGGAAAAACCTGCTTCAGACTCTACAAAAATTGAGCCAGTAGCCGTGTGCAGAAAAGATGGCGAATATTTCCTGTGTCTTCTTTGTGAGGTCTCTACACAATTTGAACGTCACACACTAGTAGAACATTTTGTGGAGCTGCACAATACAAAATTTCACATGTGTGAGCAGTGTCACACAGGCTTTGGAACACGTCAGGATCTGAGAACGCATAATGAAATTGGTCACTTGATTCAATGTGAATTCTGCAACAAGGCATTTACAAATATTCGCGTTTATCGTGTACATAAACGGACGCATTTTGGTACATCTAAATCGTTTGAGTGTCCTGTGTGCCAAAAAATGTACGTTTCTAAAACGATTTTAGACGAGCACATGAACACCCACACTGGCGTTAGACCATTTCAATGTACTGAATGCCCGAAAGATTTTGCCTCCAAATATACTCTAATGACGCATATGAAAATACATAAAGAACGGCCCcgtccatttcagtgcgaccaatgtgacaaacgatttttaaatcaacagaatctcaatcaacacaaaaagttgcatgtatctgtgaaagccttccagtgcagcgtttgcaataaggcatttacgactcagcacagcttacaagtccataaagttgttcattcggggcagaggccgttcatttgtcggatttgtggcaagtcatttgcacgccgaccagaaattaaggatcatgaacgcattcacaccggtgaaaagccattcaaatgtgaattttgtcccatggcatttgcgcagcgcaccaacttagccactcacaggaaatcaacacacttaaatgaaaaactacacaaatgcgacatatgcttgagatcgtttaagcgcaaacgtctcttagactatcacatacaggcgattcatacaggcgaacgtccccacaaatgtgagatttgtggagcaggcttcgtctatccggagcatttcaaaaaacacatgctaatacacagtggcaagaaaccatacgcctgcgaagtgtgtggcaaacaatttaacagccgcgacaatcgaaatgcccatcgttttgtgcacagcgataaaaagccttatgaatgtatggaatgtggagcgggcttcatgcgcaagcccctacttttaacgcacatgaagCAAACGAAGCATATAAACGATACAATAATTATAAACCAACCTCAATTTACTCAACAAAATACTATTAAAACAGTGGAAACTGCCAGCTTAGCCACGGTGACATCTTCAGCATCCTTTAGTAATTTACAGGAGGATGAGTCCGACATCGATGTTGATAATGATCTCCAGTCACAGGAGGTCTCCGATGAAACGTTTGAGAAAATCATATTAAAAGGCGGAAGTTTGCTGGGTCAAAGCGTCTCCATTTCATCGCTTTACGAAAAGGATATAAATGACGATGAAAATGTCATGTCAGTGGTAAGCGAACACCTTATAAAGGACGAACTAGATGATGTTAAATATTTGGAATTTGAAGACTTGGACCGCGATACCCACCAAGCGCTAACTTGGGTGGACATCGAGGGCGACGATAAAGTTTAG
- Protein Sequence
- MESVRCYLCDHEFVEGEEPWLMFEQRLREDGQVECSLADLLGSILNKHLEEALAHSTLLCDSCNADILEYENLEKQFSQIRERVLSSYKENSTIQHLNNLLNRSAINNETLSHHVDTSTLLMPDDVDNLSNSEYAGIADMDLVEEIQDEEVDLEGSENICGKENENLAAHSGDSFIGNDSAEIMTDNFDFAAFNEHVAQNSLPSGVLNMSDGLVNLEVSEKSIEVQDIPIGGQDIIIYDVNSEHIQECDLIVQQDNCDDIKNYANSEDEDLNFVISADIFKNKASSENSHETTGADILAISNDSQEEKPASDSTKIEPVAVCRKDGEYFLCLLCEVSTQFERHTLVEHFVELHNTKFHMCEQCHTGFGTRQDLRTHNEIGHLIQCEFCNKAFTNIRVYRVHKRTHFGTSKSFECPVCQKMYVSKTILDEHMNTHTGVRPFQCTECPKDFASKYTLMTHMKIHKERPRPFQCDQCDKRFLNQQNLNQHKKLHVSVKAFQCSVCNKAFTTQHSLQVHKVVHSGQRPFICRICGKSFARRPEIKDHERIHTGEKPFKCEFCPMAFAQRTNLATHRKSTHLNEKLHKCDICLRSFKRKRLLDYHIQAIHTGERPHKCEICGAGFVYPEHFKKHMLIHSGKKPYACEVCGKQFNSRDNRNAHRFVHSDKKPYECMECGAGFMRKPLLLTHMKQTKHINDTIIINQPQFTQQNTIKTVETASLATVTSSASFSNLQEDESDIDVDNDLQSQEVSDETFEKIILKGGSLLGQSVSISSLYEKDINDDENVMSVVSEHLIKDELDDVKYLEFEDLDRDTHQALTWVDIEGDDKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01376802;
- 90% Identity
- -
- 80% Identity
- -