Esuc014212.1
Basic Information
- Insect
- Epicampocera succincta
- Gene Symbol
- -
- Assembly
- GCA_932527255.1
- Location
- CAKOBP010000070.1:206423-210112[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0072 0.47 11.1 6.0 1 23 117 140 117 140 0.95 2 14 3e-06 0.0002 21.8 1.2 1 23 147 170 147 170 0.98 3 14 0.00063 0.041 14.5 0.1 1 23 175 197 175 197 0.97 4 14 0.00029 0.019 15.5 0.5 1 23 203 226 203 226 0.90 5 14 0.00038 0.024 15.2 1.6 1 23 232 254 232 254 0.99 6 14 3.3e-06 0.00021 21.7 1.4 3 23 262 282 261 282 0.97 7 14 0.006 0.39 11.4 1.4 1 23 288 311 288 311 0.97 8 14 0.00095 0.061 13.9 2.1 3 23 422 443 421 443 0.98 9 14 0.0022 0.14 12.7 0.1 2 23 451 473 450 473 0.93 10 14 4.3e-05 0.0028 18.1 0.0 1 23 478 500 478 500 0.98 11 14 0.0066 0.43 11.2 3.9 1 23 506 529 506 529 0.93 12 14 8.9e-05 0.0058 17.1 1.7 1 23 535 557 535 557 0.99 13 14 4.5e-05 0.0029 18.1 3.7 3 23 565 585 564 585 0.97 14 14 0.0084 0.54 10.9 1.6 1 23 591 614 591 614 0.97
Sequence Information
- Coding Sequence
- ATGTCATCCCATTGTTTTGTAAAACCATTAACGCTCAAACAATGGGATGACAAAACCTCTAAGTTCATCGATACTTATGCAAAATTTCCTCTATTATACGACGGAGAGCATCCATTGTATGGTTATTTTGAGGAAATACAAAAAGCTCACAAAGATTTAATAAACGTTCTTTTAAGTGATCATGACATTGATATAAAAGATAATTTGTCGGTAGCGATAGATCAATTGCATAGTTGGTACTATGATGTCAAACAGCGTAAAGGGAAACAGTCTTGTAAATTGAACGAGGACGAAGAAGAATATTTGAAAAAGTGTCAGTTCTTACCAGAAAAAAGGCTGAAAGCGAAATTTTATTGTCATGTTTGCAAGAAAAATTTTAATATGGAACACAATTTAAAAGGTCACCTTTTTAGGAGCCATCAAATAGGTGAACTGCCCTTCCAATGTGATCAATGTGGAAAAAAATTCGAAATCAAGTCCACCCTGCAGACTCACATTCAAAGAATGCATGTCAGTAGAAAATTTCCCTGCGGTTTCTGTGGCAAGCTCTTTGCAATAAAATCGGAACTCAAAGTTCATAATATGGTTCACACAGCCGAAAAACCGCACGTTTGTGAGTTGTGTGGTAAAGCGTTTCGAATTAAAACCCAATTGCGCTACCATGTTACAGCAATACATACAAAAATTCGAGCCTACAAATGCACCATGTGTCCAAAGGATTTTCTGAAAAAACGCGATTTAACCGATCATGTAAAAACTCATCTGAATATTCGTGACAAAATATGCGAAACCTGTGGAAAGGGATTCTCAAACAGCCATTCGCTAATCAGACATCGTCAAATACATTCTGAAGTAAAACGATATGCCTGCAAATTATGTGACGCCAAATTCCATCAATTTGTTGGTCTAAATGGTCACATGAAGCGCACACATAATATTAAACCACTCATTCTTGACCAATGGGACGAAACCACTTGCAAATTTATCGAAATTTTTGCGAAATTCCCATTGTTTTATGACAGGAGGCACGCGTTGTATGGCAAATTAGAGGAAAAACAAAATGCCGTGACAGAAATCCAAAAAACCCTTCAAAGTCAGCATAACATTGAATTTAATGAAGACATGACATCCAATGCCGTAGATCAGTTAAAAACTTGGTATTATAAAATTAAACGTCGAAAAGGCAAACTTCCCGAGTTCGAGGATAAGTATTTCAAAATGTGCAACTTTTTTCCTAGTAAGAAAAATAAGGAAAAAATTTTGTGCAGTGTTTGCGAAAAAGTATTTTTTACGGAGCATACTTTAAAATACCACTTGAAAAAAGTTCACAAAGTTGGAGATTTTTCGGTTGAGTGTAATCTATGTGGAAAAAAACTTGTTTCGAAAAGTGCTGTTCAAAACCATTATGTAAGGGTTCATGCTGAAAAGAAATTCCCATGCGAATTTTGTGGAAAATTATTTGCAATACCTGCCGAACTAAAGGTACACATACGCGTACACACGGCGGAGAAACCACACGTGTGTGAATTATGTGGCAAATGCTTTAGATTACGGCATCTCTTGGGACTTCATGTTACACGTATTCATACAAAGATACGTGCCTTTAAATGTACCATGTGCCCCAAAGATTTTCTCAAAAACACCGACCTAAGAGATCATATGAAAACACATTTAAATATACGCGATAAAATATGCGAAACTTGTGGCAAAGGCTTCACAAATTGCCATTCTCTGATACGACATCGCCAGATCCACTCGGAGGTTAAAAAGTTTGCCTGTAAATTGTGCGACGCGAAGTTTCATCAATTTGTGGGGCTTAATGGTCATATGAAACGTACTCATAACATTGTTAAAAAGGACaattag
- Protein Sequence
- MSSHCFVKPLTLKQWDDKTSKFIDTYAKFPLLYDGEHPLYGYFEEIQKAHKDLINVLLSDHDIDIKDNLSVAIDQLHSWYYDVKQRKGKQSCKLNEDEEEYLKKCQFLPEKRLKAKFYCHVCKKNFNMEHNLKGHLFRSHQIGELPFQCDQCGKKFEIKSTLQTHIQRMHVSRKFPCGFCGKLFAIKSELKVHNMVHTAEKPHVCELCGKAFRIKTQLRYHVTAIHTKIRAYKCTMCPKDFLKKRDLTDHVKTHLNIRDKICETCGKGFSNSHSLIRHRQIHSEVKRYACKLCDAKFHQFVGLNGHMKRTHNIKPLILDQWDETTCKFIEIFAKFPLFYDRRHALYGKLEEKQNAVTEIQKTLQSQHNIEFNEDMTSNAVDQLKTWYYKIKRRKGKLPEFEDKYFKMCNFFPSKKNKEKILCSVCEKVFFTEHTLKYHLKKVHKVGDFSVECNLCGKKLVSKSAVQNHYVRVHAEKKFPCEFCGKLFAIPAELKVHIRVHTAEKPHVCELCGKCFRLRHLLGLHVTRIHTKIRAFKCTMCPKDFLKNTDLRDHMKTHLNIRDKICETCGKGFTNCHSLIRHRQIHSEVKKFACKLCDAKFHQFVGLNGHMKRTHNIVKKDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01074693;
- 90% Identity
- -
- 80% Identity
- -