Esuc003101.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epicampocera succincta
Gene Symbol
-
Assembly
GCA_932527255.1
Location
CAKOBP010000012.1:1968255-1971319[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.003 0.19 12.3 1.1 1 23 130 153 130 153 0.97
2 13 4.9e-05 0.0032 18.0 1.3 2 23 159 181 158 181 0.97
3 13 1.1e-06 6.9e-05 23.2 2.8 1 23 190 213 190 213 0.97
4 13 3.7e-06 0.00024 21.5 6.4 2 23 457 478 457 478 0.98
5 13 7.7e-06 0.0005 20.5 3.9 1 23 484 507 484 507 0.96
6 13 0.0004 0.026 15.1 2.1 1 23 512 535 512 535 0.97
7 13 5.8e-05 0.0038 17.7 1.3 1 23 546 568 546 568 0.95
8 13 0.00025 0.016 15.7 2.7 1 23 573 596 573 596 0.97
9 13 2.4e-05 0.0016 18.9 0.8 1 23 602 624 602 624 0.96
10 13 0.00015 0.0095 16.5 1.8 1 23 630 652 630 652 0.98
11 13 5.5e-07 3.6e-05 24.1 1.6 3 23 660 680 659 680 0.99
12 13 3.9e-07 2.5e-05 24.6 0.3 1 23 686 708 686 708 0.99
13 13 0.00068 0.044 14.4 0.1 1 23 713 736 713 736 0.98

Sequence Information

Coding Sequence
ATGGATATCACTACAAACTTTGCAAAATACAATAAAGGTGCAATTTGTCGTATCTGCATGCAGAATGCTAAAAATTCATTGCACATATTTAATGAAGTATTCCTTGACAACAAAAGTCTTACTATAGCAGAAATAATTACCGAGTGTACAAAATATCCAGTTACACAAAACGATGAGCTACCAGCTCAAGTTTGTCAAGACTGTGTGGAAATGGCTAAAAACGCCCTTCGGTTCAAAATAAAAACTGAAAAGGCATATTGCCAGTTAAAGGCGTTGTACGATATAAGTTGGGTTCCGAAGCAAGAACGGGGTAGTTATAGAGGTAGTGCAATGAGGGTGAGCGCCTTCACCATACACAAGTATACACAAACAGAAAAAACCAGTGTATTTCAGTGTGAGATTTGCCCGCAGAAGTTTTTTGTAGAAAGTGAAATAAGACACCATCGAGCCACCAGCCATATTCATGATGGCAAAAAATGTCGTGTTTGCGGCGAATCATTCAATCATTTGGGTCAACTGAAGATTCATTTGTCAACAGAACATCCCGATGAAGGTATACGTTGTGATTTTCGATGTGATATTTGCTCCAGAGAATTCACCCGTAAAGATCATTTAAAGAGGCACTTAATACGGGTGCACAAGTTAGATGATACGAACCTAAACATCACTAAAGTGTCTCTTGATGAACCCGAAATAGAAAATCCTCCAGTATTGGCATCTACTTTAAATAACTATAGCAGTCACTGGCCAGACTATCAGGAGGAAGAAGGCAAGGAACCAATTGCAATTGATGACCAGAAAAATCATACTATTAACCCTACGAATCCTTTCTCAAGTGAGGACGAAAGTGTAGATCACCGCGATTTGAATGATATGGATGATGAAGATGTAAAACAATTTGTGGAAACCATAGCCCATCCCGAGATTTCCATTAAAGTTGAAAACCATGACTTCAGTTACAACATATTAAATGATAAAAATGAAAAACTCAGTAACTTTACAAACAGTTCACTTGGTGAAATAACTACGGAGCTTAACCCAGACAACTCTGTGGACAATCTGAATAGACAGTACAATAATGAAGAAGACTATGAAAGCAATAACGTGAATGGTTCATTTGAAGAGCATCATAGCAATTATAATTCCAGTGAGGATAATACTGAAGAAGATTCCGAACCGGATGTTGAAGACCACAAGGAAGATAATGAATCGATTAAAAAGTTTAAGTTTGCGGTAAAGGCAAAGTCTATAAAAGAAGAACAAATTGATGAACAAATTGAGAGTGCTACAAGTTCCAGCAACAGAAATAAAAAGTCAATGGCAAAACCGCCCAGACGCCAGTACGGCTCTTCCAAAAATGAAGAAAATCGCTGTAAGGAGTGCGGTCGCACATTTACTCGCCATAACCATCTCTTGCGTCATATGCTTACACATAGTGATGAGAAGCCTCATGTTTGCAGTTTCTGCAGCAAAGGGTTTTCTCGTTCAGATCATTTGCAAAAGCATATACAAAGTATACACTGTGAAAAGAGCTATAAATGTGATCAGTGCTCAAGTGCTTATGGTCGCAAGGATCATTTGCAAAGGCATGTAGAAACGAGGCATAACAAGGACCCTAACGTCCAAAGACCTCAATTCGATTGTGATATGTGTGAGAAAAAGTTCACCACCAAGGCCTACTTAGTGAAGCACAAGCTGCTGCACACCGATCGTCTTTACGCCTGCAAACATTGTTCGGAAACGTTTACAGAAAAGGATCTAATGAAGGAGCATCAAAAGAAAATACACACGCAACCACGCAACTTCCTGTGCAACATTTGCGGAGACTCATTTCAGCGCAACGAATATCTCAAAATTCACATGCGTCGACATACTGGAGAAAAACCTTATAGGTGTCGATTTTGTGAAAAAGGCTTTCCGCGTAGCACTGATTTAAAAATGCACGAAAGATATCATATGGGCCACAAACCAAATCTATGCAATTTATGCGGCAAAGGCTTCCACCGTCCCTACAATCTCACCATACACATGCGCACTCATACGGGTGAGAAACCATACAAATGTAATCAATGTCCTCAAGCTTTCGCCCAAAGTAACGACTTGAAAGCCCATATAAGACGTCATACAGGCGAACGTTTCCGTTGTGATATATGTAGTGCCGCTTTTTTGCAACGCTATGGCCTAAACGCTCATTTAAGAACAGTACATGGTATAATAGTTACTTCGTTTACCGGACGTCTGCGAAAAACTGATCAGCCAATTGATACAGCCGAGCAACTTGATCAACAACTGCCGACGGAACCGCAGGCAACTGCAGCTCCAGTTGTTGCCACACAAGAACCGTCCCAATCCTCGCTGCCTTCGCCACCATTAGATAGCAATGTTACTCCTCCACCGTTGTACTTGGGTCACAATTTCATAAATCCCGTACCAAATGCTGTGGCCCCCAACACACCAACATCGCCCACTGATATTTCCGCTACACATCCCTCTGCGCAACAAATGAATGTTAATTAA
Protein Sequence
MDITTNFAKYNKGAICRICMQNAKNSLHIFNEVFLDNKSLTIAEIITECTKYPVTQNDELPAQVCQDCVEMAKNALRFKIKTEKAYCQLKALYDISWVPKQERGSYRGSAMRVSAFTIHKYTQTEKTSVFQCEICPQKFFVESEIRHHRATSHIHDGKKCRVCGESFNHLGQLKIHLSTEHPDEGIRCDFRCDICSREFTRKDHLKRHLIRVHKLDDTNLNITKVSLDEPEIENPPVLASTLNNYSSHWPDYQEEEGKEPIAIDDQKNHTINPTNPFSSEDESVDHRDLNDMDDEDVKQFVETIAHPEISIKVENHDFSYNILNDKNEKLSNFTNSSLGEITTELNPDNSVDNLNRQYNNEEDYESNNVNGSFEEHHSNYNSSEDNTEEDSEPDVEDHKEDNESIKKFKFAVKAKSIKEEQIDEQIESATSSSNRNKKSMAKPPRRQYGSSKNEENRCKECGRTFTRHNHLLRHMLTHSDEKPHVCSFCSKGFSRSDHLQKHIQSIHCEKSYKCDQCSSAYGRKDHLQRHVETRHNKDPNVQRPQFDCDMCEKKFTTKAYLVKHKLLHTDRLYACKHCSETFTEKDLMKEHQKKIHTQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYRCRFCEKGFPRSTDLKMHERYHMGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDICSAAFLQRYGLNAHLRTVHGIIVTSFTGRLRKTDQPIDTAEQLDQQLPTEPQATAAPVVATQEPSQSSLPSPPLDSNVTPPPLYLGHNFINPVPNAVAPNTPTSPTDISATHPSAQQMNVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01376797;
90% Identity
-
80% Identity
-