Efoe037851.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747121.1:5828073-5846059[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.079 6.3 8.7 6.3 1 23 277 300 277 300 0.94 2 12 0.0032 0.25 13.1 0.2 1 23 321 344 321 344 0.96 3 12 0.051 4 9.3 4.7 1 21 381 401 381 402 0.95 4 12 5.4 4.3e+02 2.9 0.6 2 23 408 429 407 429 0.83 5 12 2.1 1.7e+02 4.2 3.6 1 23 839 860 839 860 0.96 6 12 0.003 0.24 13.1 2.8 1 23 875 897 875 897 0.97 7 12 0.11 8.8 8.2 0.2 2 23 903 924 902 924 0.95 8 12 0.22 17 7.3 0.9 3 23 1019 1039 1018 1039 0.91 9 12 1.4e-06 0.00011 23.6 3.1 1 23 1082 1104 1082 1104 0.99 10 12 4.3e-05 0.0034 18.9 0.5 1 23 1109 1131 1109 1131 0.98 11 12 0.0061 0.48 12.2 3.8 2 23 1138 1160 1137 1160 0.95 12 12 0.22 17 7.3 0.1 3 22 1199 1218 1198 1220 0.88
Sequence Information
- Coding Sequence
- ATGACTGAAAGCGGTAGGAAAAGGTGCAGAAAAGCGAAACTTGTGCCGCGGGACTGTGCTGAATTTTTGGACGATGATTTAGTTTTGCAGGCACCAGCGCAAAAGAAGCCACTTctcgaaaaaataaaaaaagagccAGGCTACTTTATCCCTCAGGATTCCTCGCTCCAATTCTCAGTAAAAGTGGAAATCGAAGACATGGACGGATCCATACCTGATGAAGATCCTTCAGACTACATGAAGTACCTCTTCAGTCTGTCTAAAGAAGCCGAAGACCAGGAGGAACCAAAAAATCTAGATTTCGCCGACAACAGTCTATTACTAGAGCAAAAACTAGTAATACCTGTGTCTGAAGATGAgaaatattgtattgtagataTAAAGAAAACACAGAAGATGCTTGGGGTCTTGCATAGGAAGTATCCGGAAGAGAGAGAGGCAGTTATGTATACTAGGAACCAATGGGGCAAGGCATTCAGTGAGAAACTACCTTTAGATTTGAAGAGGACACCTCAAGAACAGCTTATACAAGCCATTCTTGAGAGATGGAAGgaatGGACAGCGATTTCTAGAAGTAAAGAGAGCCCACACAGCTACAAATGCTACATCTGCAACAACGGGTGGTGGTCGCTCACGGAATTCTCTACGCACATAACCAACCACTTACATTGCAACCTCCAGATCGAAACCAGGCACCAAGAGTGTAACATAGTCGCCTACGGCAACGAGGGGTTTCTATATAAAGAAATAGAGATCCATGGCAAATGTCTCAAATGCGCTAAAACTTATGAACACCATTTAACTAACAAGAGACACCTAGATTCTTTCTACTATTGCAATTACTGCAACGAGAGATTCCAGACCTGCAGAACTCTAGCGAAGCACGAAGGCACATGCCATAGGAACCCAATAAGAGTGCTAGCTATTTCGAAAGCGAGGAAAGAGTACTCATTCTCGGATTTCTCCTGCGAAGTATGTCAGATTGTGTTCATGTCTAACCCAGACTTGTCGGAACACATGATAATATGCCACAAGGTCCGTTCAGACGAGCCAATAGTAACCAGATTCAAAGCCTGTTCGTTATGCGAACAGAAGTATTTCAACTTTAACTTCCACGCTTGTTTGAAGAAGAACGTGATCTATGAATGCAAGCATTGTTCAGCGAAGTTCCATACAAAGCAGATGCTGGAGCATCATACGAAGATGTGGGCTTCGGTTGTCCAGTGCCGGATATGTGGGAAGTTCCTGCAGAGGGCCTGCATGGCTGCGGAGCATTATTCTCTGCACAGCGAGGAGTTCATGTCGGTGCTGCGGTGTCTGGTCTGCAAGAAGATAAAGGTGTTCATGAGCGAAGAAGCCTGGACTAGCCACCGGTCCAAGTACCACCGCAGGGTCGACTCGAGGAGGCCCAACTGTGATAAGaTCATCATAGCGAGGATAATGCTCGAGCAGTGCATGGTGGAACCAGTGAAGCGGACATCGAAATTGCCGCAGACACCCGCCGCGGGCAAGCAGAACTTCAAGCTGACCAGAGGCGAACCCATACCACGTAAAGCACCCCCCACTAAAGATGGCCggaaatATGTTAGAGTGTACGTGCCAGTGCACAGAAATAAGGAACCACTGTCGCAGAATACTACAACTGCTCATGACGCTGCTGTCACTATGCGGGCTGAAGAACCGGCGAAAGATAACCTAGTCCGAGTGAAAGTAGAAAAAGATGACATCAGTGAAAATGAAGTTAACGATAGTGTAAAGATATTCAAAAATGAAGAAGAGAAAACTGAAGAAGTATTTGAAGATTACAAAGTACCTGAGAGTTCACAACTGATTGAGGATATAAAATCGGTTGATAAGGTAAAGGAACCTGATGAATCACAAGAAATTATTGAAAATGTACAAAGGAATGTAATGATAACTGAGGATTTTGAAGATAAAGTAatcaaaattaatgaaaagaaaattgaaaaatcacaagaagttattgaaaatatacaaatgaATGTAAAGATAACTGAGGATTTTGCagataaattaatcaaaattgaAAAAAACGATGAAGAGACAGACAATTTAAAAGGCAACACAGTTGAATGCGAAACGAGTAGAAAAGATATAAGTAATATTATGGAAGAACTTAATGAATTCCTTGATATTAAACctgatattataattaaacaagAACACGTGCCCGAAGACGAAGCTACCACGCTATCTAGTCTAATGTCTACTGACATTTCTAAAGTTTTCCAAGCTTCAAGCACGTTCgctgaagaggtaacagacaattCTGAACACTCTAAAGTATTCCAATTATCTAAAACTATTTTGGAGTCTTCAGTTATAAAGCAAGAAGTTAAAGAAGAACCTACGGATGATGACGACGATTTGATCATTCTGAATCCTAGCGATTATTCGTCAAAGAATAATAGTGGAAGATCTAAAAATCCAGAGGATATATTGAATCTGGAGCCGGAAGTCATACTCAAAGCGGGCTATAGGAAGAGGAAAATCTACAGGTGCAATAAATGTGATTATTCCGGATTCCACAGAGAATATAAAGAACATATAAACAGCCATTGCAACAAATCACCGAAGGAACACAACATTATGGAGATCAACTACAAATGTACTAAATGCGATAAAGGATTTCCTAATCTTAAGAAATATACTTTACACTTCGAAAAGCACGGCTACCGGTACATGTCTTGTCCGCAATGTAAGACAGGATTTGACAGTGTCACTAAACTAGTGTCACACGTAAACGGTCATATGAAAAATCAATTCGTCAGAGTTCGGTTAATAAACGACGCTGAAGATTCGAAAAGTTGTAAAGAGTATCAGTGCAAGAGTTGTGCGGAGATGTTGAAGATAGAGAACTGGTTTGTGCATTGGGAGAAACATTTGGAGTTGATGAAGGAGCCTCCGAAGCCAGTGGAGAGTTTTAAAGTGGGGGAGGGAGGAGAGCGTGCGCTGAACCCGGACTGTCTAAAAGAAGTCTTAGCGGTACTCACAGCACAAGACCGCTCCTCCGACACGATCTACACCAAATCCTGCGTCGCGTGCAGCCGAGTGTTCAAACGACGCAACGACACCAAGAGGCACCTCGTTGAGCATCTTCTAGAAGACGCTTACGCTAAAGTAGTTGACAGTCATATGCTGAAATGTCAAATCTGTCACACCCTACACAAGAAACCGCACGGCTATAAAAAGCATATGAGAGACCACGCGAGCCTGCCGATATATAAATGCGGGTTGTGTAATAAGACATTTAGTGATTCGAGTAATTTTACGAAGCACAAGAAGGTACATAATTTGAAGGCGTATATATGTGATATTTGTAATAAGAAGTTTCAAGCGAAGATATCTTTGGAGAAACATATTCGGATGCACATGCAGACGGATCCGATAACCTGCGACCGCTGCCAGAAGGTGTTCCACGACCGCTCCTTCTACAAGCGGCACGTGCGGCAAAACCACGACAAGTCCGCCTCTCGCTACAGATGCATGCTATGCCGTGAGAATTTCTCCGCGCTCCGTGACAAATGGGATCACATGTGGCTCGTCCATAAACAACGTAAAGAGGAGGCGGACTGCCCCATCTGCGGCGTCGCTTACAGGAAGTTCAACGACGTGAAAAAACACGCTTACGAAGCGCACGGGAAACGTATCACTATGTCCAATCTGTGGAATCTGTTGACCAAAATCAAGGTGAGAGATAGAGAGGTTAGGACAACGGGACAACCTGTGCGAATGGAGATTGTCCCGGCTAAAGATTCAGCGGCAGTTGCACAGAAAGAAGCAGAGAGCAGTGATGATGACTGTTTGTTGATTGAAGAGGAGAGGGAGACTTTAATCATTTATGACTGa
- Protein Sequence
- MTESGRKRCRKAKLVPRDCAEFLDDDLVLQAPAQKKPLLEKIKKEPGYFIPQDSSLQFSVKVEIEDMDGSIPDEDPSDYMKYLFSLSKEAEDQEEPKNLDFADNSLLLEQKLVIPVSEDEKYCIVDIKKTQKMLGVLHRKYPEEREAVMYTRNQWGKAFSEKLPLDLKRTPQEQLIQAILERWKEWTAISRSKESPHSYKCYICNNGWWSLTEFSTHITNHLHCNLQIETRHQECNIVAYGNEGFLYKEIEIHGKCLKCAKTYEHHLTNKRHLDSFYYCNYCNERFQTCRTLAKHEGTCHRNPIRVLAISKARKEYSFSDFSCEVCQIVFMSNPDLSEHMIICHKVRSDEPIVTRFKACSLCEQKYFNFNFHACLKKNVIYECKHCSAKFHTKQMLEHHTKMWASVVQCRICGKFLQRACMAAEHYSLHSEEFMSVLRCLVCKKIKVFMSEEAWTSHRSKYHRRVDSRRPNCDKIIIARIMLEQCMVEPVKRTSKLPQTPAAGKQNFKLTRGEPIPRKAPPTKDGRKYVRVYVPVHRNKEPLSQNTTTAHDAAVTMRAEEPAKDNLVRVKVEKDDISENEVNDSVKIFKNEEEKTEEVFEDYKVPESSQLIEDIKSVDKVKEPDESQEIIENVQRNVMITEDFEDKVIKINEKKIEKSQEVIENIQMNVKITEDFADKLIKIEKNDEETDNLKGNTVECETSRKDISNIMEELNEFLDIKPDIIIKQEHVPEDEATTLSSLMSTDISKVFQASSTFAEEVTDNSEHSKVFQLSKTILESSVIKQEVKEEPTDDDDDLIILNPSDYSSKNNSGRSKNPEDILNLEPEVILKAGYRKRKIYRCNKCDYSGFHREYKEHINSHCNKSPKEHNIMEINYKCTKCDKGFPNLKKYTLHFEKHGYRYMSCPQCKTGFDSVTKLVSHVNGHMKNQFVRVRLINDAEDSKSCKEYQCKSCAEMLKIENWFVHWEKHLELMKEPPKPVESFKVGEGGERALNPDCLKEVLAVLTAQDRSSDTIYTKSCVACSRVFKRRNDTKRHLVEHLLEDAYAKVVDSHMLKCQICHTLHKKPHGYKKHMRDHASLPIYKCGLCNKTFSDSSNFTKHKKVHNLKAYICDICNKKFQAKISLEKHIRMHMQTDPITCDRCQKVFHDRSFYKRHVRQNHDKSASRYRCMLCRENFSALRDKWDHMWLVHKQRKEEADCPICGVAYRKFNDVKKHAYEAHGKRITMSNLWNLLTKIKVRDREVRTTGQPVRMEIVPAKDSAAVAQKEAESSDDDCLLIEEERETLIIYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -