Efoe015324.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747100.1:27643902-27648168[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.021 1.7 10.4 0.4 2 23 504 525 503 525 0.97 2 13 4.7 3.8e+02 3.1 0.0 2 23 532 554 532 554 0.93 3 13 0.0048 0.38 12.5 1.7 1 23 653 676 653 676 0.96 4 13 0.027 2.1 10.1 3.6 1 23 682 705 682 705 0.91 5 13 0.16 12 7.7 0.1 1 12 706 717 706 724 0.89 6 13 8.1 6.5e+02 2.3 0.3 2 20 734 752 733 754 0.77 7 13 2.5 2e+02 3.9 2.2 3 23 762 783 760 783 0.94 8 13 0.00057 0.045 15.4 1.7 1 23 818 840 818 840 0.97 9 13 0.76 61 5.6 0.6 2 23 847 868 846 868 0.95 10 13 0.013 1 11.1 4.0 1 23 900 923 900 923 0.97 11 13 9.8e-05 0.0078 17.8 5.1 1 23 929 951 929 951 0.99 12 13 2.1e-06 0.00016 23.1 3.1 2 23 959 980 959 980 0.97 13 13 0.0017 0.14 13.9 0.8 1 23 986 1008 986 1008 0.98
Sequence Information
- Coding Sequence
- ATGTCGTCTAAAGGATATATACGAATTCCCGACTCCCAGATCCTCCTAGAGCGGAGAAAAAGAATGAAAAATAGAACGTGGCATCAGCATATTATGAATTTGTTAGTGGGGAAGAATGTTTGTGGCTCATGTTTACGTATTGAGGACGAGCTGATACATTGGGATGCGGAATTTGTTATGTTACGTTATGATCATGACATAGAAAGTTCTCTGAAGAACATTATGATGTCGACTTTTGGGCCTAGCgTAACAAACATCATACCAACAGCGAATTTTTGCAAGGAATGTGTAGACACAATCCTCACTGCTCACTTACTCATTTTGCAACTCAGAAACAACTGTAAAGAAATACAAAAGAAGTTAACTGAAATATCACAGCAGATGAAATGGACCTCTTATTTAAATGAACATGGCGGGTTGATAGAAACTGTCAATGATAAGACCAGTCTTGATGATGATAACACAAAAACAACACCCATTCATGATTTCAGAGACCTTAATGACTCAATGGAAGAAGAGAAATCATTAAAAACGCATAAAATTGTACTAACCAATGAATCTCTTAAAACTAAATTACTCCAAGAACCAGATATGCATAAGTTTTTAGTAAATGATGAAGTACCTAAGTCATCAGAAGTGTCGGAACCCAAATTGCCCGCAGGAATCACAGTGAGGAAAGTCAGGAAAAGTGTAGACATGTCTGACTTTGCACCTCAAGACTTATTAGAACTGAACTGGGCTGAAGATGAAAATGTATCACAAACAGCAGATGAACCCGATAACAAACTGCAGAGCAATGAAGCTTTGATAATGAATTTGATGGAGGAAGCAAAAACTGTTGAGAAGCACAAACATTTCCATGATAATTTAAAATTGCAAGTTAACAAAGCACTTACAGTTGTAGAACATCATAATGATTCTCTTTCTGTAAAATTAGTACAAAATGAGACTGATGAAGCAACTGTAAGTAATGAAAATGAGAGTGACAATGAAGATCTAGTGCCTCAAGATCTTCTCGAGCTGAAATGGCCAGAAGAACAGAACACAACACAAACTAAAATCCCGGTCAAGAAACTTAACTTCAATGAAGCTTTGACAGTCAAATATATCCCAAGTCATAAACCCCCCACAGCTGAAGATGGTGATGACGAACTGGCACCTCATGAATTACTTGAATTGAATTGGAATGAAGCTGGTGTACAAACCAGCCTTCCACAAGGTAAACAAAAACATAGCATAGATTTGACACAATGGTTACATGATCAAGGAATGAGTACTATCAAAACTAAAGGGGCCACTGATAACAGTAACACACAGAAGTTAAATAATGATATAGAAGCGCAAATATCAAAAAAGACTAAAGTAGAAAACATACACAAGGACACCAAGGAATTTTCAGAAAACAACAAGAAACAAATGATTGTTACTGGAAAATCGAGAGGTTTATATAATTGCAATATTTCTGTTAAAAACTTAGAAGTAGCTACAGAACAAGATGAAAATATAATCAGATGTGCCCTTTGCGATGTAAATTTTATCCAATATGAATCTTATTCTAGTCACTACAAGACACATAATATATCAGAACCTGCCAAATGCTATAGATGCGGTGGTAAATTTCCTGTCATTGAATTATTGGTTGAACATTTATTGCTAGTTCACTCTGAAGACATGGCATATTGCACACTCTGCTTTGCCTTGTTAAACCAGAACAAAGTAGCGAAGCATATGGTTGACTACCATGCTAAGAAAGTAGAGGTAATTAATGCTGCTAGCACTATTCCTTTAGTAACTAAAGATGGTCATTGTAAAAGATGCGATCAATTACATACGGACTTTCCCAACAGCCCACATGTTTGTGTCTTCCGTTTGGACTGCCCAGTATGCTCTGAAGAATGTATACACGAAAAGTTCTTAAAATCTTACATAGAGCAGATCAAAGCTAACAAAGTTGTGTTCAAATGCACAGACTGCGATTACCTATACAAAACCAAACACGATATCGTCAGACATGCGAATGTTATGCACTTGAAACACTATTCTCATCAGTGTGTCGTCTGTAAAACCAGGTTTTCGACACAGTTTGAGTTATCTAATCATAACTATTCGCGCCATTTTCCGTGTGAGCATTGCAAAAAGGTGTTTGCTGACATGGATATTTTACTTGGCCACGGCTGTCCGAGAGAATTAGCAAATTTGACTTGTGAAAGCTGTGGACAGAAATTTATCGCTAGAAGAGTGTTTGATCAGCATAAGAATACAGCTGCAGCAGTAACAGATCATTGCACTCTGTGTCGCGATACAGTTGCTAATAGATGCAACATGGCTCGACATATGCAAGTCGTTCATCAAGCCAGTCTAAAGAAGACGGACGATGGAATTCTCCACCAATGCATCATATGTCGCAAGAGTCACCACAGTAACATTGAATTCAAACAACATGTTTGTTTGCACGAATGCCGGATTTGTGTAAAAAGGTTTACTACAAAAATACTCCTTGATAATCATATGCAGAACCACAATTTAAAGCAACTATTGATGTGTactgtttgtaatttaaaattgTTGAATAAATTCGCTTTATCGCAACATATGCTGAAACATCGCGGGCACGAACAGTGTCCGGTATGCTCCAATTACATTCAGAAAACGGTTTTACCGGAACATATTGAAAGTCATAACGATCCTAAAAACCGTTTCAAATGCCCTCACTGCTCCTTGGTATGTGAGAATCGGAACCAATTTGAAGTACACGTGAATAGATTTCATTTGTTGACGCGTCCGTATCAGTGCGATATGTGCAAAAAGTCTTATTACAGTAAACATAAGCTACGGGAGCATATAAGACAACATTCTACCGAAGCCCGAAGGGAAAGATGCCCGTTATGCGGCAAGAAATTCGCAAGAAAACACACTTTGGAGAAACACATGAAACTACACTCCACAGGGCAGCTTTATAATTGTGACATGTGTGATAAAAGATACATTTCTGTTGTTCTGTTAAATCAACATCGTTTCACTCACAGAAAAAATGATTCAGAGTTCCCGAAGGCAGAAACTTCTCAAAGCAGCCAAAATTAA
- Protein Sequence
- MSSKGYIRIPDSQILLERRKRMKNRTWHQHIMNLLVGKNVCGSCLRIEDELIHWDAEFVMLRYDHDIESSLKNIMMSTFGPSVTNIIPTANFCKECVDTILTAHLLILQLRNNCKEIQKKLTEISQQMKWTSYLNEHGGLIETVNDKTSLDDDNTKTTPIHDFRDLNDSMEEEKSLKTHKIVLTNESLKTKLLQEPDMHKFLVNDEVPKSSEVSEPKLPAGITVRKVRKSVDMSDFAPQDLLELNWAEDENVSQTADEPDNKLQSNEALIMNLMEEAKTVEKHKHFHDNLKLQVNKALTVVEHHNDSLSVKLVQNETDEATVSNENESDNEDLVPQDLLELKWPEEQNTTQTKIPVKKLNFNEALTVKYIPSHKPPTAEDGDDELAPHELLELNWNEAGVQTSLPQGKQKHSIDLTQWLHDQGMSTIKTKGATDNSNTQKLNNDIEAQISKKTKVENIHKDTKEFSENNKKQMIVTGKSRGLYNCNISVKNLEVATEQDENIIRCALCDVNFIQYESYSSHYKTHNISEPAKCYRCGGKFPVIELLVEHLLLVHSEDMAYCTLCFALLNQNKVAKHMVDYHAKKVEVINAASTIPLVTKDGHCKRCDQLHTDFPNSPHVCVFRLDCPVCSEECIHEKFLKSYIEQIKANKVVFKCTDCDYLYKTKHDIVRHANVMHLKHYSHQCVVCKTRFSTQFELSNHNYSRHFPCEHCKKVFADMDILLGHGCPRELANLTCESCGQKFIARRVFDQHKNTAAAVTDHCTLCRDTVANRCNMARHMQVVHQASLKKTDDGILHQCIICRKSHHSNIEFKQHVCLHECRICVKRFTTKILLDNHMQNHNLKQLLMCTVCNLKLLNKFALSQHMLKHRGHEQCPVCSNYIQKTVLPEHIESHNDPKNRFKCPHCSLVCENRNQFEVHVNRFHLLTRPYQCDMCKKSYYSKHKLREHIRQHSTEARRERCPLCGKKFARKHTLEKHMKLHSTGQLYNCDMCDKRYISVVLLNQHRFTHRKNDSEFPKAETSQSSQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01073120;
- 90% Identity
- -
- 80% Identity
- -