Efoe035829.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747119.1:989151-991370[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00082 0.065 14.9 3.7 2 21 167 186 164 187 0.91 2 11 0.62 49 5.8 0.2 3 23 195 215 194 215 0.83 3 11 0.00098 0.078 14.7 0.5 1 23 220 243 220 243 0.95 4 11 3.8e-06 0.00031 22.2 0.2 1 23 248 270 248 270 0.98 5 11 0.0054 0.43 12.3 2.0 2 21 274 293 273 294 0.92 6 11 0.024 1.9 10.3 0.4 2 23 337 359 336 359 0.94 7 11 0.18 14 7.5 0.6 3 23 367 386 366 386 0.90 8 11 0.0016 0.13 14.0 0.2 1 23 392 414 392 414 0.98 9 11 0.086 6.8 8.5 1.8 1 23 420 443 420 443 0.96 10 11 0.0026 0.21 13.3 0.2 1 23 452 475 452 475 0.97 11 11 0.11 8.7 8.2 5.6 1 23 485 507 485 507 0.98
Sequence Information
- Coding Sequence
- ATGAATCGTCAAGTGGATGTAAAAGCTTTAGTTTCTCACATAGTGAGAGGCGATGGTTTGGACAAATGTCGGATTTGTATGGGGGACACGACCGAAGGCCAAGTCTACCTCGGTGATACGGTTATGATGGACGGAGACCGACCAGTAACGCTTTCTGAGCTTCTGGAAATAATTACAGGCATCGAGGTTGTCTTGGAGGAGGACCTTCCTGCCGGGCTGTGCACTTCATGTGCCCAGAGAGCCTTGGAGGCTGCCAGCTTCCGTACGCTGTGCAGGCAAGCCGCTAACCAATGGGACACTACTCTACAGCTACTAATAAACTACCTGCCGACTAAGTACAAAAATGCAAACATGTATATCTTATTGGATAAAGATCAAATTACTATAGTCGAAGATTTGAAAGGATCAAATAAAGAGAGGCATGCTGCAGAAAAATATGCTTCGAATATCATACAGAGAGTCAAAGAGGCGAAAGTGAAAGATGTGAAGCATAAATGTCAGTGCCAGGATTGTGGGAAGAAGTTTGCATATCCTCAGCATTTGTATTTACATTTGAAGGAGTCTATGGATTTGAAGCGCGCTTGCTATGTATGTGCTAAGATCATGACCAGAGATAATTTGATTCGGCATCTGAAATCTGAGCATCAGCTGAAATGTTACGATTGTAAGAAGTGCCCGGCTTTGTTTCGGTCTCATGAGATGTTAATTCGACATATACAGGAGGCCCATAGTTCTGGCGCTTACAGTTGTGGAGACTGTGGGCGTAGCTTTAAAACCAGACCGGCTTTCAATGCTCATTTATCCGTCCACATTAACAAAACCTGTCCAGGATGCGATAGGATGTTCAGGAATCAAACGTGTTACTTGTACCATGTGAAGAAATGCTGCGATTTGGATGTCAGCAAGAAAACTCATCAGACAAAGAATAAAGTGACTATAGAAGTTAAGAATAAAATGAGCGAGAGGCGAACTAAAGTTGGCCTCCGTGGAGCAGCCGATAAAGAATGCATCTGTGATTATTGTGGCAAAAAGCTAGCGGGGAAAAAGTTTATAACTGCTCACATACAGATAGTGCACCTTAAGAACACTCATAGACCTTGTCCGTACTGCGGCAAGTTCCTCGCCTCGGCCCACATGAGTGAACACCTTAAAAAGCATGAGTTCGAGACTCAATACACATGCGAATACTGCGGAATAATCTTAAAAACAAAACTAGGCTACGTTCAGCATATACGTCTGCATACCGGTGAAAAGCCATATGCGTGCCAGCACTGCGGTGATACATTCTCAGCATCTTCGAGGAGATCAGAGCATATTCGCAAAACACACAAAGCTGGCAGTGTTGTTCTGAAATATGCCTGCGAATACTGTCCGGCAAAGTTCCAATTACCATATAAACTTAGGAACCATGTGTCCACAGTGCATAATACAGAGGACAAAGCCGCAGTACCGTTTTCCTGTAAGATTTGTATGGAAAAGTTCAGCAGTTGTAGGGGGCTCGCGCACCATAGTAGGAAGCATCAGAAACTTCAAAGCAATGTCGACTTTAAGGTGTATAGTAAGCCAATCGAAAGTTCTGTGGAGTcttaa
- Protein Sequence
- MNRQVDVKALVSHIVRGDGLDKCRICMGDTTEGQVYLGDTVMMDGDRPVTLSELLEIITGIEVVLEEDLPAGLCTSCAQRALEAASFRTLCRQAANQWDTTLQLLINYLPTKYKNANMYILLDKDQITIVEDLKGSNKERHAAEKYASNIIQRVKEAKVKDVKHKCQCQDCGKKFAYPQHLYLHLKESMDLKRACYVCAKIMTRDNLIRHLKSEHQLKCYDCKKCPALFRSHEMLIRHIQEAHSSGAYSCGDCGRSFKTRPAFNAHLSVHINKTCPGCDRMFRNQTCYLYHVKKCCDLDVSKKTHQTKNKVTIEVKNKMSERRTKVGLRGAADKECICDYCGKKLAGKKFITAHIQIVHLKNTHRPCPYCGKFLASAHMSEHLKKHEFETQYTCEYCGIILKTKLGYVQHIRLHTGEKPYACQHCGDTFSASSRRSEHIRKTHKAGSVVLKYACEYCPAKFQLPYKLRNHVSTVHNTEDKAAVPFSCKICMEKFSSCRGLAHHSRKHQKLQSNVDFKVYSKPIESSVES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658890;
- 90% Identity
- -
- 80% Identity
- -