Efoe038045.2
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747121.1:9053008-9071107[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3 1e+02 4.8 0.2 1 23 216 238 216 238 0.96 2 12 7 5.6e+02 2.5 0.1 6 23 244 261 240 261 0.90 3 12 1.3 1e+02 4.8 0.2 1 23 296 318 296 318 0.96 4 12 0.0013 0.1 14.3 0.6 1 23 325 348 325 348 0.95 5 12 1.2 93 5.0 3.2 1 23 352 374 352 374 0.97 6 12 4.1 3.3e+02 3.2 2.4 1 23 379 402 379 402 0.83 7 12 3.6 2.9e+02 3.4 0.0 3 21 446 464 445 469 0.89 8 12 4.4e-05 0.0035 18.9 0.2 2 23 514 536 513 536 0.96 9 12 2.8e-06 0.00022 22.7 1.4 2 23 546 567 545 567 0.97 10 12 3.6e-06 0.00028 22.3 0.8 1 23 573 595 573 595 0.99 11 12 1e-05 0.00079 20.9 4.4 1 23 601 623 601 623 0.98 12 12 3.9e-06 0.00031 22.2 1.3 1 23 629 652 629 652 0.98
Sequence Information
- Coding Sequence
- ATGTCTCAATTATTACTCTGCAGGGTTTGCTTAGCTAGTAACGTGACCGTTTACAACATACTGAACTCCTGTCTTCAGGAGATGTACGAGAAACTGACGAGGTTACCGCTGCATGCAGATGATGGAAAACCCAGTACAGTGTGTTACATCTGCCTGGCGCTGCTCCGGAAGAGCTACCAACTGTGGGTGCAGTCCGTCACCTCCGACAGGTTGCTGAGCAGGCTCCTCGCTACCAATCATGAGCTCACACAAGGTCTCATAGAGCATATAGACAGAAAGGGCCACAAGCTAGAGAGGGGCCTCACTTGGACGTTCACGGACCATTTATACGTGGGCCCCGCCAGTGTGAAGGAGGAGTCGTTGAAGGAGGAGGTGTTGGAGGAAGAGTCGTTGAAGGAAGAGCCAGCGGatgtGGCATCAGACACCGACCACGTGTCAGTGAAAGAGACAGCAACAGATTCCGAGGACGACCTTCCGCTGACTACCATCAGCAGCCAGAAGAAAAGAGAGCCAGTTCAGAATAAGGACAAGGAATTTCTAAAAGGATTCAAGTCCGGCTACGCCCGCGAACTGATCCTGAGCCGCGCGCAGCAGGCGGCGGAGCTGCTCGCGCGCGGCGTGTCGGTGAACTACCTCAACGCGCCCTTCAAGTGCGTGCCCTGCCGCCGCGGGTACGTGGAGCCCGCCGCCTACACCAACCACCGGCTCAAGCACGCAGAGTGCGTGCCCTGCCGCCGCGGGTACGTGGAGCCCGCCGCCTACACCAACCACCGGCTCAAGCACGCTGAGTGGTCCGACTGCACCCCCGAGCTGATCCTGAGCCGCGCGCAACAGGCGGCGGAGCTGCTCGCGCGCGGCGTGTCGGTCAACTACCTCAACGCACCCTTCAAGTGTGTGCCCTGCCGCCGCGGGTACGTGGAGCCTGCCGCCTACACCAACCACCGGCTCAAGCACGCAGAGAAAAGCGGGTCACATGTGTGTGACATTTGCACGATGCGCTACAAGACTGCGCGCAAGCTGCGCGCGCACGTCGTGACTGCGCACGAGCGCCGCTACCAGTGCAACACGTGTGAACATCGGTCGCACACCGCGTCACAAGCGCGTGAGCACGAGAAATGGCACCGCGGGCATTTATACGTGTGCAAGTTGTGCGGGCACACGTCGCGCGCGTCCACGTCGCACCTCACGCACCTGCGCGCGCGCCACCGCACGCAGCACGCCTGCGCCGCGTGCGGCGACAGCTTCCTCGGCGCGCACGGCCTGCGCATGCACCGCGGCAAGGCGCACAAGCACAGCCAGCCGGTGACTGACGACACCCCGGCCTCCGAGCGATATTGTGGCGACTGCGACATCCAGTTCTTGTCGCTGGTCGCCTGGAAGAGACATCTCCTCAGTGCTGCCAACCACGTCTTCACCGACCATAAGGGCGTATGTGTGATATGTGGTCCCTCGTGTCCCGGTAACGGGACGCACCTCAAGGAGAGCGTGAAGGCGCTCCGCCCCACCAACAAGGCGCCTCCGCTCCGGGCTACAACAGTCACTTGTGAACAGTGTGGCTCGTCATTCGCAAACAGCTCGAAACTGCAAGCGCACGTGAAGAGGGTGCATTTGGGTGTGAAGTACAACAAAAACGTCGTCTGTGAAGTTTGCGGCAAGAGTTGTACAtccaaCGCCTCTTTAAAATACCACCAACGTACCCACACAGGCGAGAAGCCCTACCAGTGTGCGACGTGCCCCAAAAGGTTCGCAGACAGCAATCAGCTGCGGATCCACACGCGGCGGCACACGGGCGAGCGGCCCTACTGCTGCCGCCACTGCGGCAGGACCTTCGCGCAGAAGCCGGCGCTCAACAGGCACTACCGGGTGCACACAGGAGCGAAGCCCTACTCGTGCCAGTACTGCGCGAAGAGTTTCAGCCAGTCCAACTCGCTCAAGCTGCACGTGAGGACGGTACACCTCAAAATGCCGGGGAAGAAACGCCAGGAAGACAAGAAGGACTTAACTGTGGATAAGGCTTCGGAGAATAATCTGTTACTACAGCCAAGAGTATAG
- Protein Sequence
- MSQLLLCRVCLASNVTVYNILNSCLQEMYEKLTRLPLHADDGKPSTVCYICLALLRKSYQLWVQSVTSDRLLSRLLATNHELTQGLIEHIDRKGHKLERGLTWTFTDHLYVGPASVKEESLKEEVLEEESLKEEPADVASDTDHVSVKETATDSEDDLPLTTISSQKKREPVQNKDKEFLKGFKSGYARELILSRAQQAAELLARGVSVNYLNAPFKCVPCRRGYVEPAAYTNHRLKHAECVPCRRGYVEPAAYTNHRLKHAEWSDCTPELILSRAQQAAELLARGVSVNYLNAPFKCVPCRRGYVEPAAYTNHRLKHAEKSGSHVCDICTMRYKTARKLRAHVVTAHERRYQCNTCEHRSHTASQAREHEKWHRGHLYVCKLCGHTSRASTSHLTHLRARHRTQHACAACGDSFLGAHGLRMHRGKAHKHSQPVTDDTPASERYCGDCDIQFLSLVAWKRHLLSAANHVFTDHKGVCVICGPSCPGNGTHLKESVKALRPTNKAPPLRATTVTCEQCGSSFANSSKLQAHVKRVHLGVKYNKNVVCEVCGKSCTSNASLKYHQRTHTGEKPYQCATCPKRFADSNQLRIHTRRHTGERPYCCRHCGRTFAQKPALNRHYRVHTGAKPYSCQYCAKSFSQSNSLKLHVRTVHLKMPGKKRQEDKKDLTVDKASENNLLLQPRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -