Efoe015119.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747100.1:21437024-21439551[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.09 14.5 2.1 1 23 280 302 280 302 0.98 2 12 1.4 1.1e+02 4.8 0.2 5 14 357 366 355 370 0.86 3 12 2.8e-05 0.0022 19.5 0.8 1 23 384 407 384 407 0.97 4 12 0.00027 0.022 16.4 0.6 1 23 412 434 412 434 0.98 5 12 0.02 1.6 10.5 1.8 2 23 456 478 455 478 0.93 6 12 0.0099 0.79 11.5 1.9 1 23 482 505 482 505 0.97 7 12 0.19 15 7.4 0.3 2 23 528 550 527 550 0.93 8 12 8.1e-06 0.00065 21.2 2.9 1 23 560 582 560 583 0.96 9 12 0.0057 0.45 12.3 1.4 2 23 599 620 598 620 0.96 10 12 0.013 1 11.1 0.6 1 23 626 648 626 648 0.96 11 12 0.69 55 5.7 2.7 1 22 654 675 654 678 0.90 12 12 0.0037 0.29 12.8 0.2 2 23 722 743 722 743 0.97
Sequence Information
- Coding Sequence
- ATGGCCTTAGAAAATACCCTCCAAATGGACTCAAACTACCAATTAACAGATAGTGTAACTATAAAGGAGGAGTTAGACAATAACATAGTCATAGAAGAACACAATGTggaattacaatttaaaaaagaaacggAAGAAACTTATTCCCAAGAAGTAAAGGAAGAACCAGAACCAGTGAATTTCAGGAAATACATAGAGAATAAAATCTTAGAAGAATTTAAAGTACAAAGTGAAGTAGATTCAATACTACCTATTATAGACCCGGAGGAGGAGTCAAATTTGAAGCAGGAATGTTTGGAGGATGATGCCATGATTTCATATGATTTCCCAAGCTTTGACGATGGTAATGTGGGGCCACAGAGCATGGAGACTGGCAGTATGGACAGCAATGATGCCGCAGCACTTGGGAATGTGGAGACTTGTTTACAGGAGGATGGTGTCAATATCAAATACGAGAATGACGAGTATGATAATAATGAACCCAACTCTTTCCAGGATCCCCATATAAATGTGAAAGAAGAGAGAGACTTAACAGTAACGGAAACACATTTAATATCAAATAAAGTGATCAACACTACATCAACCATCACAAACCCGCAGGACGGGCTCATCGagtcacaaacaacaaaaaCACTAGTCATGGAAATCCATCCCATGTCACATGCTGGCAACATCCCATTGTCTAAAATAGGTAACCCAGAGGAAATTTTACCCACCAACGAAGAATATGAAGACTTTCAACTAAATTCTATTACGGGAAACGAATTGACACTAGAACAGGAGGCCTATGGACTTTTGAAAGCAAAGAAAAGAAAGACTACTGATATAGAAAAATCCCATCAATGTCCCAAATGTGTGAATGCGTACAGAAGCGCCCATTCTCTTCAAAAACATCTATTAGTGCATGCCAGCATAGAGAACCGTGCCAAAGGCGTTTTACAAGGACAGAAAACGCGGCTTCTAAACAAGCTAAAAGCCGAAAGAAAATTCCGTATGGAatcaaagaaagaaaagaagaaaatcAAAAAGAAGCCTGTCGAAATTGTTAAGAAAGAAGGCTATGAATGCACCTGCGGCAAGGTGTTCCGTCGGAGAAGTCGCATGGAAACGTGTTTACGATCACACAACTTGTTCGCGGAAGTAAAAACTTACCCTTGTCCAACATGCGCTAAAAGTTTCAAAGACAAAACCGAACTAGCATTACACAGAAAGCGGTTCCATGTTAAAAAGAAATTCCCGTGTAAATTTTGCCCCACCGATTACAACACGCCTAAAGAACTCTTCAAGCATTTACAGATACACCAAAAAGTTCAGCTAATGGAGTACAAAGTTATCTCCGAAATTGTTAAAGGTAAAAAGAAGCTTCGGTGTTTCATGTGCTCTAAAACTTGCAATGAACTTTCAGATTTAAAGTCACATGTAATGGAAGACCATAAAGAGCCTTATATATGTCAGCACTGTCAGCAAACATTTCCTAAAATAATTGATTTTGCAAATCACACGAAAACATCACATCCTGAGGTCGAAGGACAATCGGTCTTAGACGTCCTTGAGGCATTTTCAAAGCTAGTTCAAGCATGGAAATGCGAGGAATGTGAACTACAATTTCATGAAGCAGACAAACTAGCTATGCATCAGATAGAAAAACATAGTCGCGAAGTAAAATCAGAGCTACAATTTCAATGTAACGATTGCCGAAGAGTTTTCATCACACAGAAAGGTCTAACGTCACATAGAAGAGTCCATCACAGTACAGAAGAACCCGAAGTCAGCGATATCGTAGAGCAGGGCATAATGTGTTTAGAATGCAGAAAAATATGCAAGGATATGAACGCGTTAACATCACATATGAGGCTGCATTCCCCTGAGCGGAAATATCCCTGCAAATTTTGCGATTTCCGATTCGCGACACCCGAGAAGCGGAAATCGCATGCGGAAATTCACACAGGCGATATGAAATATGTTTGTTTCATCTGTGAATATCAATGTACGTCAGAGAACAGGCTTAAACAGCATAAACTTTCAGCGAAGCATTCAAATATGAAGGAATACCTTCTTACCGGGAAGGTCAACAACGAAACTTCTCAGCAAGAGCAGATCAAAGCGTCTCAAAGTAAAAGTGTtaagaaaaagaagaaagaagaaccCCCAGAGATCGAAGCAACTTGTGAAGTTTGCGGTGAAAAGTTTCCGAGTGAAGAGACAATGTTAGAGCACAAACAAACTCATCCATTCATAGAATTCCCTAACGAAGATACGCCTAGTAGGATATTCTTTAAGTAG
- Protein Sequence
- MALENTLQMDSNYQLTDSVTIKEELDNNIVIEEHNVELQFKKETEETYSQEVKEEPEPVNFRKYIENKILEEFKVQSEVDSILPIIDPEEESNLKQECLEDDAMISYDFPSFDDGNVGPQSMETGSMDSNDAAALGNVETCLQEDGVNIKYENDEYDNNEPNSFQDPHINVKEERDLTVTETHLISNKVINTTSTITNPQDGLIESQTTKTLVMEIHPMSHAGNIPLSKIGNPEEILPTNEEYEDFQLNSITGNELTLEQEAYGLLKAKKRKTTDIEKSHQCPKCVNAYRSAHSLQKHLLVHASIENRAKGVLQGQKTRLLNKLKAERKFRMESKKEKKKIKKKPVEIVKKEGYECTCGKVFRRRSRMETCLRSHNLFAEVKTYPCPTCAKSFKDKTELALHRKRFHVKKKFPCKFCPTDYNTPKELFKHLQIHQKVQLMEYKVISEIVKGKKKLRCFMCSKTCNELSDLKSHVMEDHKEPYICQHCQQTFPKIIDFANHTKTSHPEVEGQSVLDVLEAFSKLVQAWKCEECELQFHEADKLAMHQIEKHSREVKSELQFQCNDCRRVFITQKGLTSHRRVHHSTEEPEVSDIVEQGIMCLECRKICKDMNALTSHMRLHSPERKYPCKFCDFRFATPEKRKSHAEIHTGDMKYVCFICEYQCTSENRLKQHKLSAKHSNMKEYLLTGKVNNETSQQEQIKASQSKSVKKKKKEEPPEIEATCEVCGEKFPSEETMLEHKQTHPFIEFPNEDTPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00289988;
- 90% Identity
- iTF_01072898; iTF_00289988;
- 80% Identity
- -