Efoe038136.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747121.1:10440768-10475855[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0051 0.4 12.4 0.1 2 23 415 436 414 436 0.96 2 11 0.43 34 6.3 2.0 1 23 758 780 758 780 0.97 3 11 4.4e-05 0.0035 18.9 2.0 1 23 785 808 785 808 0.96 4 11 1.1 87 5.1 0.1 3 23 815 836 814 836 0.91 5 11 0.0039 0.31 12.8 0.1 1 21 844 864 844 868 0.90 6 11 0.013 1.1 11.1 0.1 2 21 872 891 871 894 0.88 7 11 0.0083 0.66 11.7 3.2 1 23 899 922 899 922 0.97 8 11 0.00061 0.049 15.3 0.2 1 23 947 969 947 969 0.98 9 11 7.2e-05 0.0057 18.2 0.2 1 23 974 996 974 996 0.97 10 11 7.9e-05 0.0063 18.1 1.2 1 23 1002 1025 1002 1025 0.96 11 11 0.00046 0.036 15.7 0.2 2 23 1033 1055 1032 1055 0.95
Sequence Information
- Coding Sequence
- ATGGATATCGTAAACTACGATACCCCGCGCGATTGCAGGGATATAAAGAATGACGAAACTCAAGAAGACGTCAAGGTCCATACTTCAGGATTTGAGGATGGGAATGCCTTGTTAAGATGTCGTGCGTGTCTGTTATCCGGACTCAAATTGTTCAATATACATGAATACAAGCTCGCTGATGCGTTTACCCGCGTAACGGGGACTCTTGTGTATAAGGATAGGTTCCCTCAGCACCTCTGCTGGTACTGCCGCGCCATACTGCTCCGAGGGGATGCCTTCAGGGATAGGTGCCTCCGCTCCCAGGAACAACTCATGGCAGAGCTCGCTGCAGGCTACACACACACAGGTAGTCAACTTGTCCCTAACCTAACTCTAAGCGCCGTACAAACTGTAGAATGCACGGATATGAAGCCACCtgacaatataaaaaaagaagatgAACCTGATACAGATATAGATATAGTTGATATTGAAACTATAATAAATAACGCTGTTttaaaaacagaaaatagcgGAGATGAAGTTACAATCAGTGACCGAGTTGAAATATTAGATGAAAAAGTCAAAGATGCTAAAAGAATGAAGAAAATCACAGTAAAGAAAAAGATAGAAATAGGAAATGTCACTGATGAAGATTCTGATGGTTTTCATGCCGAAAATGTAAAAGAATTCAAAGatgttaaaaatattaagagAAGCGCAGTCAAGAAAAAGATTGAAATAGAAAATGACCCTGACGAAGATTCTGATGGTTTTGACGCAGAAGATGTAAAAGAAATCAATGATGTTAAAAGAATTAAGAGAAGCGCAATCAAGAAAAAAATAGATATAGGAACTGACACTGACGAAGATTCTGATGATTATTACGCAGAAAATAGGGAAATAGAAATCGAAGGAGATGAGGTGTATGTTAGTAGTATAGACATTGTCAGTCCAGTGAAAAAGGGAGCTAATAATGACAAAAAGAGAAAGAATAGTGTTAAGAAGATTAAAAAAGAGTTAGGAACTAATCAATCCAAAGATTTAGATGTAAATGCGAAGCCGAAAGTGGTTAAAAGAAGGAGAAAGAATACAGAAAAAATGAGAAAGTTCAGGAACGCAGAGAATGATTACATGCCTGTATTTGATTTTTCCAAGTTTGAGGGTAGCTACGGAGTGAAAATTGTACTGTTGAGTAAGGAAGAGCAATTAAAAGAGATCGCGTCCCGCAAGGAGTCCGCAAACTACTTGGATTCCCCGCTGAAGTGCGAGGACTGCGGGAAGGGCTTCGTGGCGGAGGCCGCATTCAGCAACCACAAGCTACGACACGATCCAGAGCAACTGAGACAGGTCGGGTGCCACATGGAGGCCGCCTACAGCAACCACAAGCTACGACACGACTCCGAGCAACTGAGACAGGTCGGGTGCCACATGGAGGCCGCCTACAGCAACCACAAGCTACGACACGACTCCGAGCAACTGAGACAGGTCGGGTGCCACATGGAGGCCGCCTACAGCAACCACAAGCTACGACACGACTCCGAGCAACTGAGACAGGTCGGGTGCCACATGGAGGCCGCCTACAGCAACCACAAGCTACGACACGACTCCGTCGGGTCCCACATGGAGACCGCCTACAGCAACCACAAGCTTGGACACGACCCAGTGAGTTTGTTAGGAGCAACTGAGACAGGTCGGGTCCCACATGGAGACCGCCTACAGCAACCACAAGCTAGGACACGACCCAagtGCAGGCCCATACACCTGCGAAATCTGCAAGGCGCGCTTCAAATTGAAATGCCGCCGACAAGAGCACCAGGATACGCACCTGCTCAAGTTCATCTGCCAGGAGTGCGACTTCGTCTCCCGGACCAGGTCAGCCAGCTATTAGTAGTGTCCCAGTTTGGCAGGCCCATACACCTGCGAAATCTGCAACGCGCGCTTGAAATTGAAGTGCCACCGACAGCAGCAGCAGGAACGTATCTGCTCATCTGCCAGGAGTGCGACTTCGTCTCCCGGACCAGGCCCATACACCTGCGAAATCAGCAACGCGCGCTTGAAATTGAAGTGCCACCGACAGCAGCATCAGGATACGTATCTGCCAGGAGTGCGACTTCGTCTCCCGGACCAGCAGCAGCAGGACACGTATCTGCTCATCTGCCAGGAGTGCGACTTCGTCTCCCGGACCAGGTCAGCCGGCTATTAGTAGTGTCCCAGTTTGCCAGAGCCATACACCTGCGAAATCTGCAACGCGCGCTTCAAGATGAAATGAGCCGACAGGAGTACGTCAAGTTCGTCTGCCAGGAGTGCGACCTCGTGTCCCGGGCCAGGCATCAGGCGCGCAAGCACCACGCCATGCACGCGGGAAAGATCTACGCGTGCAAGCACTGCGGGAAAACATTCGATAAAAGTTCGACGTATTTGTCGCATGTGCGTCTCGCGCACCCGGCAATGAACGTGGCGTGCGAGCTGTGTGGCGAGACCTTCCTCGGGCAAATCGGGCTGCGGCAACACAAGGCCAAGACTCACGCCGCGATGATGACTCATCCATTCAAATGCGCAACGTGTTCAGCGAGCTTCGTGAGTTTAGACGCGCTGAACAGACACACAGACAGCGGCGGGCATGCGGGCAGCCCGTGCGAGCAGTGCGGCGAGAGCTGTGCGAGCGAGGACGCGCTGCGGGCGCACGTGGGGGAGAGGCATCCGAGCGAGTCGCATCGGTGTGAGGAGTGCAACGCGACGTTCTCGAGCGCGGCGTCATACGACCTCCACCACCGGCGCAAGCACCTCAACCAGCCGTTCAGCAGCGCCGGGCTCCCGCCCCGCCCCACGCGCACTTACCCCACCAGCCGCGGGCAGTTCGTGTGCGAGCAGTGCGGCCGAACGCAGCCGACGGCGTCGCTGCTGCGGCTGCACCAGCGCATCCACAAGGACAAGCAGTTCGCGTGCCCGCAGTGCCCCAAGGCCTTCGCCGCCAAGCACTCCTTAGACTGGCACATCCGCTCGCACACGGGCGAGCGCCCGTTCCAGTGTCCGCAGTGCCCCCTCGCCTTCAGCATCAATTCCAACTTCAAGCGGCACCACAAGGCGGTGCACCTCGGGCAGCGCAAGCGCGTGCCGTGCGCGATCTGCGCGCGCGTGTTCACGACCAACTCGTGCCTGCGCGTGCACGTCAACATGGTGCACCGCGGCGTGCCCTGGCCCAAGCGCGACCGCAAGCGGAAGAAGgcaaacaaacaataa
- Protein Sequence
- MDIVNYDTPRDCRDIKNDETQEDVKVHTSGFEDGNALLRCRACLLSGLKLFNIHEYKLADAFTRVTGTLVYKDRFPQHLCWYCRAILLRGDAFRDRCLRSQEQLMAELAAGYTHTGSQLVPNLTLSAVQTVECTDMKPPDNIKKEDEPDTDIDIVDIETIINNAVLKTENSGDEVTISDRVEILDEKVKDAKRMKKITVKKKIEIGNVTDEDSDGFHAENVKEFKDVKNIKRSAVKKKIEIENDPDEDSDGFDAEDVKEINDVKRIKRSAIKKKIDIGTDTDEDSDDYYAENREIEIEGDEVYVSSIDIVSPVKKGANNDKKRKNSVKKIKKELGTNQSKDLDVNAKPKVVKRRRKNTEKMRKFRNAENDYMPVFDFSKFEGSYGVKIVLLSKEEQLKEIASRKESANYLDSPLKCEDCGKGFVAEAAFSNHKLRHDPEQLRQVGCHMEAAYSNHKLRHDSEQLRQVGCHMEAAYSNHKLRHDSEQLRQVGCHMEAAYSNHKLRHDSEQLRQVGCHMEAAYSNHKLRHDSVGSHMETAYSNHKLGHDPVSLLGATETGRVPHGDRLQQPQARTRPKCRPIHLRNLQGALQIEMPPTRAPGYAPAQVHLPGVRLRLPDQVSQLLVVSQFGRPIHLRNLQRALEIEVPPTAAAGTYLLICQECDFVSRTRPIHLRNQQRALEIEVPPTAASGYVSARSATSSPGPAAAGHVSAHLPGVRLRLPDQVSRLLVVSQFARAIHLRNLQRALQDEMSRQEYVKFVCQECDLVSRARHQARKHHAMHAGKIYACKHCGKTFDKSSTYLSHVRLAHPAMNVACELCGETFLGQIGLRQHKAKTHAAMMTHPFKCATCSASFVSLDALNRHTDSGGHAGSPCEQCGESCASEDALRAHVGERHPSESHRCEECNATFSSAASYDLHHRRKHLNQPFSSAGLPPRPTRTYPTSRGQFVCEQCGRTQPTASLLRLHQRIHKDKQFACPQCPKAFAAKHSLDWHIRSHTGERPFQCPQCPLAFSINSNFKRHHKAVHLGQRKRVPCAICARVFTTNSCLRVHVNMVHRGVPWPKRDRKRKKANKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -