Basic Information

Insect: Epiblema foenella
Gene Symbol: RTase
Assembly: GCA_963556455.1
Location: OY747100.1:27650223-27658569[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.9 2.3e+02 3.8 0.4 1 23 954 977 954 977 0.94

2 17 0.00018 0.014 17.0 0.6 2 23 983 1004 982 1004 0.97

3 17 0.00074 0.059 15.0 0.4 2 23 1035 1057 1034 1057 0.96

4 17 1.3 1e+02 4.9 2.2 2 23 1122 1144 1121 1144 0.95

5 17 0.0021 0.17 13.6 0.3 1 23 1150 1173 1150 1173 0.93

6 17 0.4 32 6.4 0.7 1 16 1177 1192 1177 1194 0.89

7 17 0.05 4 9.3 5.7 1 23 1207 1230 1207 1230 0.98

8 17 0.25 20 7.1 0.6 1 23 1235 1258 1235 1258 0.91

9 17 7.3e-06 0.00058 21.4 0.6 3 23 1272 1292 1270 1292 0.97

10 17 0.0024 0.19 13.5 2.5 1 23 1298 1320 1298 1320 0.98

11 17 0.0011 0.09 14.5 2.9 1 23 1359 1381 1359 1381 0.98

12 17 0.45 36 6.3 0.1 2 23 1386 1406 1385 1406 0.94

13 17 0.026 2.1 10.2 0.2 1 23 1422 1444 1422 1445 0.96

14 17 0.00018 0.014 17.0 1.8 1 23 1451 1473 1451 1473 0.98

15 17 2e-05 0.0016 20.0 3.4 1 23 1479 1501 1479 1501 0.98

16 17 0.00058 0.046 15.4 0.2 1 23 1507 1530 1507 1530 0.96

17 17 0.14 11 7.9 0.4 2 23 1536 1558 1535 1558 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.9	2.3e+02	3.8	0.4	1	23	954	977	954	977	0.94
2	17	0.00018	0.014	17.0	0.6	2	23	983	1004	982	1004	0.97
3	17	0.00074	0.059	15.0	0.4	2	23	1035	1057	1034	1057	0.96
4	17	1.3	1e+02	4.9	2.2	2	23	1122	1144	1121	1144	0.95
5	17	0.0021	0.17	13.6	0.3	1	23	1150	1173	1150	1173	0.93
6	17	0.4	32	6.4	0.7	1	16	1177	1192	1177	1194	0.89
7	17	0.05	4	9.3	5.7	1	23	1207	1230	1207	1230	0.98
8	17	0.25	20	7.1	0.6	1	23	1235	1258	1235	1258	0.91
9	17	7.3e-06	0.00058	21.4	0.6	3	23	1272	1292	1270	1292	0.97
10	17	0.0024	0.19	13.5	2.5	1	23	1298	1320	1298	1320	0.98
11	17	0.0011	0.09	14.5	2.9	1	23	1359	1381	1359	1381	0.98
12	17	0.45	36	6.3	0.1	2	23	1386	1406	1385	1406	0.94
13	17	0.026	2.1	10.2	0.2	1	23	1422	1444	1422	1445	0.96
14	17	0.00018	0.014	17.0	1.8	1	23	1451	1473	1451	1473	0.98
15	17	2e-05	0.0016	20.0	3.4	1	23	1479	1501	1479	1501	0.98
16	17	0.00058	0.046	15.4	0.2	1	23	1507	1530	1507	1530	0.96
17	17	0.14	11	7.9	0.4	2	23	1536	1558	1535	1558	0.95

Sequence Information

Coding Sequence: ATGggcattaattttatttcaatttatattccTCATCCTCATTTAAATCTCATTCCTGAGCTCTCCACCATCCTCTTTTCTGTCCCACCACCTCTTATAGTTCTAGGAGACTTCAACTGTCACCATTCTTCTTGGGGATCACACCATTCCGATGTATTTTCATCATTCCTCATTGACTTGTTTGATGACATCAATGTCTGTGTGATCAATGACGGTACGCCCACACACCGGGTTTACCCAGGTCAAAACCCACAGTCAGTACCGGACTTGACTGCTTGCTCTCCTAACCTGTCTTCAGTGCTGGCATGGGAGAAAATCTCGGCTCGCACCAAACGTTTACTGGCAAAATGTAAGAAGAGGGGATGGAAAGGTTTCTGTGAAAGTCTATCTCCCAGAACCCCAGCTGCAGTAATATGGAGACACGTTAAAAAATTCAGAGGATCATTTAAGCAAGACCCGTCGTTCTCCTCTGATCCATCAGCATGGGTTAGTCATTTTACAGACTTGCTAGCTCCGTTTACAGTCCCAGAAGTGGTTTGCGTCTCGCCTATTCTTCCTCCCTCATCCCTGAGCCCCCTCGACAAGCCCTTCTCATTCGCGGAGCTCAAACTGGTTCTGGATGGATTAAAGGATTCTTCACCTGGTGAGGATGGCATTCCGTATTGCTTCttgacaaaattaaatacattctcACAGGAGCGTCTTCTAGAGATCCTGAACCATGTCTTTGATACTGGAGACGTTCCTGAGGAATGGAAGACACAAGTTATTATCCCGATcttaaaaccaggtaaagacCCAGAAGAAGCAAGCTCATATCGTCCAATTGCCTTATCAGCAACAACAGGGAAAATACTCGAACATTTAGTAAAAAACAAATTGGAGTGGTTTGTAGAGAATAGAGGAATTATAGCAGACACTCAGTTTGGGTTCCGTAAGGGCAGGAGCACTATGGACAGTGTAAGCATACTCACATCAGACATTTGGTTAGCACTCTCTAAAAATGAACAACTGTTAGGATGTTTTCTGGATATTTCTGCGGCCTACGACAATGTCCTTCTTCCGGTGCTCAGAGCAAAAATGCTACACCTGAGCATTCCCGTGAAGATTGTGCACATTGTCTCCAAACTTTTCATGGGAAGAAGTATCAAGGTCCGGAGTGGCAACACATATTCCAGCCCCCGCACTCTATGGCAAGGTCTGCCGCAGGGATCAGTCCTCAGTCCTCTTCTCTATAATATCTACACATACGATCTTGAACAGTCAGTTTCGTCGTTTTGCAATATCCTGCAGTACGCTGACGACCTTGTACTGTACTCTTCAGCTCATTCCGTTGACAGGGCCGCTGCTAATCTTAACACAGCCCTCAGCTACCTTAAAGACTGGCTGGATGAACACGGGCTAACCCTATCTCCATCCAAGAGCTCCATTGTGACTTTTACTCGCAGAAGGAACATACCCAACTCAAATATCTACTATGGCAGTGAGATCATCCCCATCAAGGAATCGGTCAAATTCCTGGGTGTCATTTTAGACGGTAGAATGTCAGGGGTACCGCACCTTAATTACGTAACCAGTAAGTGTGAGAGAGGTATCAACATCCTGCGAGCCTTGTCGGGTGTATGGTGGGGTGCTCATCCCTATTGCCAGAAGCTGATATATAATGCTATCATACGGAGTCAAATAGATTATGGCTCGTTCATTCTAGAGCCCTGTAATAAGGGAGCCCTcaacaagctggatttaatacaGGCAAAATGTTTGCGGGTTATACTGGGCGCTATGAAGTCCTCCCCGAAGAATGCTATGCAGGTGGAGTGTGTGGAACCGCCTCTTTCCCTTCGCAGACAATATTTGGCTGATAGATTCTTCATTAGAGCAAGCTCCATCAATCATCCGCTACTCCCACGGCTGCGTACCCTTGCTTTGGAGGTCGCTGAAAATAGATATTGGGATCATAAGGACTTCCCGAGGATTATAatcagtttttcaaaattaaataatgttaacgCAATCATATGTAAATCAAAAAACAACCCTCTATTTGAAGTAAGCTTTGATACTATAATTTTCTCACCTAGAGTTATTCTAGATTTTGGCATATTTAAAGATGACCCAGAAGCTAATTCTAAATTTggtaaaattctggaaaaatggCCAGAATACTTATCTATTTTTACTGACGCTTCCAAACTGGATACAACACGGGAAAACACTGCAATGGAGGAACCAACCGTTTCAGACGCGGTtgatacaaatttaaaaacagaaaACACAGACCCCGACACAGGAACCACAGATCCAGATACAGGAAACACAGATCCTGAGATAACAATTGCATTTAAAGATTACAACGACTTTGATTTCATCAGAGACAATCTTAAGAATGTGTTGTATTCACCACAATTCTGCGGGATCTGCCTCGCAGCCAGTGAAGACTTGTGTCCCATGAGTGTGGAGCTGGAAGTTATAACACACAGGGCTACAGAAGTTAAACCTTTGGAAGATATTGTTgcctatatttttaatagtcaaGTCAAAAACGTCCTAGCCAGCGCATACATGTGCAATAATTGCATTGACAAAGTATTGCCTTCATACATCTTCATCCATAACACACGAGACTCATTTAAAGTCATCAACAACTGTCTCAACGAGTTAAACTATAAAATCATCAATGCTACAGGGCAGTTGACTCCTACAGACAACTACGAAAACTCTGAAGTTCTTATTATATTAGAGAATAACGAAACACCACACTTTGAAGTAGTTAAGGAATCACAGCATAGAGTTAAAAGTAATACAGTTACAGttaaaaagaagaaaatcaGGAAGAAATCTTATAGAAAACCTGCAGGTTACCGCTGTGTTGAATGTAACATTATTGTTCAAACTTTCAAAGAATGGAAACAGCATGAGAGAGATTTTCACGAAAAACCTCAGATACAGTGTCAGATTTGCAACAAAGTCTTGAGCACAGAGCAAAGTCTGAAGATTCATTACAAAACACATGCGATGATGAAATGTAAGATCTGCAACTTGCTTGTGCCAGATGGGGATTTAAATGAGCATTTTAGATTAAATCATGAAAATGAAAAGAAAACTTGCCAGATTTGCAAACTTGCTTTTTATACTAATAGTGAAATCAATGCACATATGAAAATCAGCCACCCTGACGCTGACAACCCTGATCCAACAAATGCAATGACACAATGCCTCATGTGCTTAAAACATTTTGAAGAGGAAGAACTTAATGAACACAAGTGTAAATTCAGGTGTTCCGAATGCGCGGAAGTTCCTTGCATTCATCACAAGTATCTACTGTCTTATAGGGAGCAAATAAGAGCTAGGGCGTCTAAGATTAAATGCATGGATTGCGACTATGTGTGTCATAAGAAAGACTTTCTTATCGGACATGCGAACCGGGAGCATTTGGATCACATATCGTTTGCTTGTGATATTTGCGGCCAACGTTTCTACTCCAAAGTTGGTCTAAGAGGGCACATATATCAATTCCATACAGAGAGTTATGTTTGTGAATATTGTGACCAAGAATTTAAAGGCAGTACAAATTATTATGAAAACCATAAGAAGCAATGTTCACTCAATAAGAGAGACTTCAAATGTTCTGAATGCCCTGCTTCTTTCGATAGCCATAAGTTCCTCTCTAACCACCATAAACGAAGACATATGCAGGAGGTATTTCCCTGTAATCTatgtacaaaaacatttttgacAGATGGCAAACTTAAAGAGCATACAGTCAAAGTTCACAGCGGGTTACAGAATAGAAATAGAAGGTCCTTTACAGATTGCGTCATTTGTGAAAAGAAATTTGACACAAGGGCAGATTTAAAGAGGCATATCAGAACGCATGGACCTAATGCAAAGTTCCCTTGTAAGATTTGTAATATAGACTTTGATACGTTGAAAAAACTGCATGTACATAGAAGGAAGCATGTCAAATCATATTGTGAACGGGTGCAATGTTCTGTTTGCAACATGGAACTGCAAGCTGCATGCTTGCCTCAGCACATGTTACGCCATGCAGTAGAATCGGGTGAGGCCCCAGCCTACAGCTGCGATGTCTGTGACAAGCCATGCTCATCGAAAGTGTATTTACGCTATCACAAGCAAAGCCACATGAAACCTATACCATGTCCAAAATGTGACAAGTTGATAAAGCCAGCAGGGTTACAGAAACATCTCAAATATCATTCGTACAAAGATGATCCGGTGATGAGAGAGCGAATGAAACGGAGATACAAATGTAACATCTGTGACTACATGGCCTCGGAACCAAGTATTTTAGAGGCCCATGTGAATCGCCACCATTTGAAAGTGAAACCATACATCTGTTCGATTTGTGAGAAAGATTTCTGTGGAAAACTACAGCTCACTAGACATATGGATACTCATTATGTTACCAAACAATACACTTGCGATATCTGTGACAagaaattttcaaataaaatctGTCTACGAATGCATCTAAGACTCCACACGGGAGAGAGGCCTTACTACTGCGAAGTTTGCGCGGAAAGCTTCATATCAGCCAGCGCTTTAAAAACTCACAGAATCAAGCGACATTCAGAGAAATCTATCCCCTGTCCATTTTGTAACAGAATGTTTTACATAGCTGTGGAAATGAGACAGCATTTTAAAAAGTTCCACTGGCTGCATAAGGATCGTAAGTTTGATCACAGAGAAGTAGAGGGGCTGGGTAGGGAGTTCTACTATCTGTTTGAAGATGGTAGACGGCCGAGATTGGACGACGATGATGCGAGTACCAGCAATATCATCATTGAGGAAGTTCATGAAGAGATCATTTAG
Protein Sequence: MGINFISIYIPHPHLNLIPELSTILFSVPPPLIVLGDFNCHHSSWGSHHSDVFSSFLIDLFDDINVCVINDGTPTHRVYPGQNPQSVPDLTACSPNLSSVLAWEKISARTKRLLAKCKKRGWKGFCESLSPRTPAAVIWRHVKKFRGSFKQDPSFSSDPSAWVSHFTDLLAPFTVPEVVCVSPILPPSSLSPLDKPFSFAELKLVLDGLKDSSPGEDGIPYCFLTKLNTFSQERLLEILNHVFDTGDVPEEWKTQVIIPILKPGKDPEEASSYRPIALSATTGKILEHLVKNKLEWFVENRGIIADTQFGFRKGRSTMDSVSILTSDIWLALSKNEQLLGCFLDISAAYDNVLLPVLRAKMLHLSIPVKIVHIVSKLFMGRSIKVRSGNTYSSPRTLWQGLPQGSVLSPLLYNIYTYDLEQSVSSFCNILQYADDLVLYSSAHSVDRAAANLNTALSYLKDWLDEHGLTLSPSKSSIVTFTRRRNIPNSNIYYGSEIIPIKESVKFLGVILDGRMSGVPHLNYVTSKCERGINILRALSGVWWGAHPYCQKLIYNAIIRSQIDYGSFILEPCNKGALNKLDLIQAKCLRVILGAMKSSPKNAMQVECVEPPLSLRRQYLADRFFIRASSINHPLLPRLRTLALEVAENRYWDHKDFPRIIISFSKLNNVNAIICKSKNNPLFEVSFDTIIFSPRVILDFGIFKDDPEANSKFGKILEKWPEYLSIFTDASKLDTTRENTAMEEPTVSDAVDTNLKTENTDPDTGTTDPDTGNTDPEITIAFKDYNDFDFIRDNLKNVLYSPQFCGICLAASEDLCPMSVELEVITHRATEVKPLEDIVAYIFNSQVKNVLASAYMCNNCIDKVLPSYIFIHNTRDSFKVINNCLNELNYKIINATGQLTPTDNYENSEVLIILENNETPHFEVVKESQHRVKSNTVTVKKKKIRKKSYRKPAGYRCVECNIIVQTFKEWKQHERDFHEKPQIQCQICNKVLSTEQSLKIHYKTHAMMKCKICNLLVPDGDLNEHFRLNHENEKKTCQICKLAFYTNSEINAHMKISHPDADNPDPTNAMTQCLMCLKHFEEEELNEHKCKFRCSECAEVPCIHHKYLLSYREQIRARASKIKCMDCDYVCHKKDFLIGHANREHLDHISFACDICGQRFYSKVGLRGHIYQFHTESYVCEYCDQEFKGSTNYYENHKKQCSLNKRDFKCSECPASFDSHKFLSNHHKRRHMQEVFPCNLCTKTFLTDGKLKEHTVKVHSGLQNRNRRSFTDCVICEKKFDTRADLKRHIRTHGPNAKFPCKICNIDFDTLKKLHVHRRKHVKSYCERVQCSVCNMELQAACLPQHMLRHAVESGEAPAYSCDVCDKPCSSKVYLRYHKQSHMKPIPCPKCDKLIKPAGLQKHLKYHSYKDDPVMRERMKRRYKCNICDYMASEPSILEAHVNRHHLKVKPYICSICEKDFCGKLQLTRHMDTHYVTKQYTCDICDKKFSNKICLRMHLRLHTGERPYYCEVCAESFISASALKTHRIKRHSEKSIPCPFCNRMFYIAVEMRQHFKKFHWLHKDRKFDHREVEGLGREFYYLFEDGRRPRLDDDDASTSNIIIEEVHEEII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -