Efoe037984.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epiblema foenella
Gene Symbol
Prdm9
Assembly
GCA_963556455.1
Location
OY747121.1:7989756-8002188[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 3e-07 2.4e-05 25.7 0.5 1 23 290 312 290 312 0.99
2 10 0.31 24 6.8 1.5 1 23 327 350 327 350 0.96
3 10 0.011 0.91 11.3 0.5 1 23 355 377 355 377 0.98
4 10 0.0008 0.064 14.9 8.0 1 23 383 405 383 405 0.99
5 10 1.1e-06 8.4e-05 24.0 1.7 1 23 411 433 411 433 0.99
6 10 4.9e-06 0.00039 21.9 1.5 1 23 439 461 439 461 0.99
7 10 4.8e-06 0.00039 21.9 2.1 1 23 467 489 467 489 0.99
8 10 2.4e-05 0.0019 19.7 4.2 1 23 495 517 495 517 0.99
9 10 1.3 1e+02 4.9 0.0 1 23 523 546 523 546 0.91
10 10 0.26 21 7.0 0.5 3 23 554 574 552 574 0.98

Sequence Information

Coding Sequence
ATGAGCGGCTTCAACTTACGGAAGCGCGCCCGCGTGTGCTACTACGAACCGGAGGAGCCGCCTTTCGACGAGTTTGtttTCTGCTCGGAGTGTCAGGATTATGTGTATGAGTACTGCTCCATACATGGTCCATTACTAGTTATACCAGATGACAAGGTGCCCGCCGAGACCGGGCTGCCCGCATTCGTGCCGCGCGCCGCGCTCTCCATCCCCAGCATGTTCCTGCATATCGCCTACTCCTACATCCCAGAGGCGGGTCTGGGCGTGTTCAGCACGCTGACGCTGCCCGCCGGCGTGCGCTTCGGGCCCTACCGCGGCCAGCGCGTCAAGAGCGCCGGGGACTCCAACTACGGCTGGCAGATATACGACCGCAACCACAAGCCGCTGCACATCGTGGACGCGCGCGACGCGAACAACTCCAACTGGATGCGCTACGTCAACTGCGCACGACACCACTCCGAGCAGAACCTGGTCGCCTTCCAGTACCAGGGGGAGCTCTACTATAGGACGGTGAAGATCGTGCCTCGCTTCACGGAGCTGCTGGTGTTCTACGGTAGCGAGTTCGCGGACTGCCTCGGCGTCGAACTGCGCTCCTACAACAAGCCCTGCCCTTGCCCCGACTGCCAAGCTCGACTAGCAAACAAAAATGTATCACCGAAAACTAACACACGACAAAAGCAAGTTgaagaaaagaaacaaaaaaacattgaGGAAAATAATGCAAAATGTAGTCCAGTTGAGACACTTCAAGAGACATCTACATCTGCTCAAGTGGAGCCACCAATAAACACGAATATAAAAGAAGTTCTCCTGGAACGACCTGTAGTCAATACAGTCACTGGCAACACCAACTCGAATGCGACTAACTTTAAATGCGACCAGTGTGGCAAGGATTTTGATGTGAAGTCGGACTTAGAAAAACACATACAAACTCACGAGCTTATGAAAAAGAGTATGAATCAAAGTGCGAGCAAGGATTTCACATGCAAACAATGCAGTTTTACATCTGAAACTAAATTGCTTCTTCTGGAGCATGCGAAGAGCAAGCATGGCGTGGAATACTACGCTTGCACAGAGTGTAAGTATACGACTTGGAACAAAGGGAATTTACTGGGTCATTTAAAGACTCATACTAGAGAGAAATCATATAAATGTAGTCAGTGCAGCTCAGCGTTTATCCACCACAGTCATTTAAAAAGTCATCTGAGGACACACACTGGAGAGAAACCGTATAAATGTAGTCAGTGCAGCTCAGCGTTTACCCAGAGcagtaatttaataaatcatcaGAGGACACACACTGGAGAGAAGCCATATAAATGTAGTCAGTGCAGCTCAGCGTTTACCAACAGCAGTACTTTAATTAATCATCTGAGGACACACACTGGAGAGAAGCCATATAAATGTAGACAGTGCAGCTCAGTGTTTACCCAGAGCagtgatttaaaaaaacatctgaggatacacactggagagAAGCCATATAAATGTAGTCAGTGCAGCTCAGCGTTTAGCCGGAGCATTACTTTAAAACATCATATGAGAACACACACGGGAGAGAAACCCTTTGAGTGCAACATATGCGAGTACAAGTCTGCTTGGCCAGATGCTATAAAGTCCCATCTAATGAGCGCGCACTCGGGCCAAAAGCCATTCGGTTGCAGCATTTGCAGTTACAGGGGAGCTACTAGACAAAGTGTATCACTACACAtgaaaaaacattataaacaagCTTAG
Protein Sequence
MSGFNLRKRARVCYYEPEEPPFDEFVFCSECQDYVYEYCSIHGPLLVIPDDKVPAETGLPAFVPRAALSIPSMFLHIAYSYIPEAGLGVFSTLTLPAGVRFGPYRGQRVKSAGDSNYGWQIYDRNHKPLHIVDARDANNSNWMRYVNCARHHSEQNLVAFQYQGELYYRTVKIVPRFTELLVFYGSEFADCLGVELRSYNKPCPCPDCQARLANKNVSPKTNTRQKQVEEKKQKNIEENNAKCSPVETLQETSTSAQVEPPINTNIKEVLLERPVVNTVTGNTNSNATNFKCDQCGKDFDVKSDLEKHIQTHELMKKSMNQSASKDFTCKQCSFTSETKLLLLEHAKSKHGVEYYACTECKYTTWNKGNLLGHLKTHTREKSYKCSQCSSAFIHHSHLKSHLRTHTGEKPYKCSQCSSAFTQSSNLINHQRTHTGEKPYKCSQCSSAFTNSSTLINHLRTHTGEKPYKCRQCSSVFTQSSDLKKHLRIHTGEKPYKCSQCSSAFSRSITLKHHMRTHTGEKPFECNICEYKSAWPDAIKSHLMSAHSGQKPFGCSICSYRGATRQSVSLHMKKHYKQA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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