Efoe036302.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747119.1:7779768-7782047[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0088 0.7 11.7 2.3 1 23 53 76 53 76 0.94 2 13 2.5 2e+02 3.9 0.3 3 23 100 120 99 120 0.94 3 13 0.0086 0.68 11.7 2.4 1 23 142 164 142 164 0.95 4 13 0.05 4 9.3 0.1 1 21 168 188 168 189 0.94 5 13 0.49 39 6.2 0.3 1 23 249 272 249 272 0.92 6 13 0.00022 0.017 16.7 2.8 1 23 337 359 337 359 0.97 7 13 2.4e-06 0.00019 22.9 1.2 1 23 363 385 363 385 0.98 8 13 0.00018 0.014 17.0 0.1 1 23 390 413 390 413 0.96 9 13 0.00043 0.034 15.8 0.4 2 23 420 442 419 442 0.98 10 13 0.00078 0.062 15.0 0.5 1 23 449 472 449 472 0.98 11 13 0.001 0.082 14.6 0.3 1 23 478 500 478 500 0.97 12 13 9.4e-07 7.5e-05 24.2 1.0 1 23 506 528 506 528 0.99 13 13 0.0038 0.3 12.8 4.7 1 23 534 556 534 557 0.95
Sequence Information
- Coding Sequence
- ATGAATGCTAATGAATATGGATGGAAAAGTGAAGAGTCCCTTCAGACTAGTAAAGAATTAAGTGAAGCCGAGCGGTGGCGGATCAACTTAAGAAATAACGTGTCTACTATCATAATCGCGACCACGGTTTACCCCTTTCAATACAAAAGGGGACAGTTCCTCTGTTTCTTCTGCAAAAAAACATTTCCAGAAGCAGAGAAGCTTCGCCAGCACAACCGCAAACAACATTATGATGTAAAACAACTGCCTAGACCTAAAAGTTACGATCCGTTGAAAATTGACATTGCAGAAGCATCATGTAAACTTTGCTCAGCCCAAATTAAAGATTACGCTATGTTAAAACTTCATCTGACCGAGCACGACAAACAGCTTGATATGACGCAGGGCGAGACCGTGCATCCCTTTAACTTACTCGGGTACGAGCATATATGTCAGTTATGTGGAATGGAATACGAATCTTTACAGAGCTTATTCAAACACATGCACGAACATTCAGATCGACATATATGTGAAAAATGTGGAGGTAGATTTATGAATTCTCTGCAGATGGCTAACCATATCAGAATAAAAGAATGCGGTAAATCTTCAAACAAAAAGGATTCTGTTGAAAGATACAATATTGTCGTTGATCCCCTAGCCGATGAGCGATATGACAGCGAACGGAGGCGTATTAGCATAAGAAACAATGTTTCCACAATGATAGCTACTACTACAGTTTGTCCGTTTCGATTCGTTAAAGGAGTTTACCTTTGTTACTACTGTAAGGACACGTTCCCTGAGCCTGTGATGCTTCGTGAGCACAACCGCGAACGGCACTCTGAAATGAAACAATTACCTAAAACTTATGAACCTGCAAAAATTGATTTTGTGGGTGCTTCCTGCAAGCTTTGCTTGATTGAAATTCCTGACTACCCCACTTTGAGGGCTCATTTGGCCGAACACGGAAAAGAGTTGGATATGACTCACGGCGACTGCATAATTCCGTATAAATTGAACAGTACTTCTGAGCACGTTTGTCAAATCTGCGGAAAGAAGTATGAAACATTCGTTAGTTTACACAGACATATCAACGAACATTATGACAGTTATATATGCGACAAATGTGGGAAAAAATTCATAACATCCCGACAGATGGTCAAACACGTCCGTACACACGAAGAAGGCATCTTTCCGTGCAAGGAATGCGGTCAGACGTTCACAATGCTAGCGCCTTTAACGTCACACATTGCCAAAGTACATAGATCTAAAGCCCGAAATAAATGTCCCATTTGCGATGAGAGATTTGCCTTTTACGGACAACGATTGAAACACCTACGTACTGTCCATGATCAGAAAACACCCAGTTTTCCTTGCCCTTCATGTGATAGGGTTTTCAATTTGAGCAGCAAAAGATCTGATCATATACGGACTCAGCACTTGCAGGAGAAAAAGTATGAATGTAAAGTATGCGGCATGAAATTTTTTGGTAAACGTGGACTCGAAGAGCATTTGGTAAAGCATGGCGGTGAAAAGAAGTACCAGTGTGAAGTTTGCAAGAAATCGTACGCTCGATTGAAGACGTTGCGTGAACATATGCGCATCCACAACAATGACAGGCGTTTCACTTGCGCCGCTTGCGGGCAGGCATTTGTGCAGAAGTGTAGCATGAAGCATCATATTAAAGTACACCATCCTACGCTTCTGAAAGATGAAATCGAATCGTGA
- Protein Sequence
- MNANEYGWKSEESLQTSKELSEAERWRINLRNNVSTIIIATTVYPFQYKRGQFLCFFCKKTFPEAEKLRQHNRKQHYDVKQLPRPKSYDPLKIDIAEASCKLCSAQIKDYAMLKLHLTEHDKQLDMTQGETVHPFNLLGYEHICQLCGMEYESLQSLFKHMHEHSDRHICEKCGGRFMNSLQMANHIRIKECGKSSNKKDSVERYNIVVDPLADERYDSERRRISIRNNVSTMIATTTVCPFRFVKGVYLCYYCKDTFPEPVMLREHNRERHSEMKQLPKTYEPAKIDFVGASCKLCLIEIPDYPTLRAHLAEHGKELDMTHGDCIIPYKLNSTSEHVCQICGKKYETFVSLHRHINEHYDSYICDKCGKKFITSRQMVKHVRTHEEGIFPCKECGQTFTMLAPLTSHIAKVHRSKARNKCPICDERFAFYGQRLKHLRTVHDQKTPSFPCPSCDRVFNLSSKRSDHIRTQHLQEKKYECKVCGMKFFGKRGLEEHLVKHGGEKKYQCEVCKKSYARLKTLREHMRIHNNDRRFTCAACGQAFVQKCSMKHHIKVHHPTLLKDEIES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658809;
- 90% Identity
- -
- 80% Identity
- -