Efoe036054.2
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747119.1:3999593-4013950[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.27 21 7.0 0.6 1 20 210 229 210 231 0.95 2 19 0.67 54 5.7 0.2 2 21 259 278 258 281 0.89 3 19 3.1 2.4e+02 3.7 3.3 1 23 304 326 304 326 0.97 4 19 0.00074 0.059 15.0 1.4 1 23 330 352 330 352 0.98 5 19 0.035 2.8 9.8 1.5 1 23 357 380 357 380 0.92 6 19 0.086 6.8 8.6 0.3 2 23 388 410 387 410 0.88 7 19 0.0006 0.048 15.3 5.2 1 23 417 439 417 440 0.95 8 19 0.0057 0.45 12.3 1.1 1 23 446 468 446 468 0.95 9 19 4.5e-06 0.00036 22.0 0.3 1 23 474 496 474 496 0.99 10 19 5.6e-06 0.00045 21.7 4.6 1 23 502 524 502 524 0.98 11 19 0.0045 0.36 12.6 0.2 1 23 628 651 628 651 0.95 12 19 8.7 6.9e+02 2.2 0.1 2 23 677 699 676 699 0.85 13 19 0.03 2.4 10.0 4.2 2 23 723 744 722 744 0.97 14 19 0.0017 0.13 13.9 0.5 1 23 748 770 748 770 0.97 15 19 0.0071 0.57 11.9 0.5 1 23 777 800 777 800 0.97 16 19 0.0029 0.23 13.2 1.3 2 23 808 830 807 830 0.95 17 19 2.5e-06 0.0002 22.8 0.9 2 23 836 858 835 858 0.97 18 19 2.4 1.9e+02 4.0 1.0 1 23 864 887 864 887 0.89 19 19 2e-05 0.0016 20.0 1.6 1 23 893 916 893 916 0.98
Sequence Information
- Coding Sequence
- ATGGAAACCCAGAATACGCTGCACAGCGGCATGTGCCGGTGCTGCTCGTCCGAAGGCACATTCAAAGACATTAAAACTAAGTATCACTGGATGGGCGATGAAGAGGTTTATGCTGATATGTTGACTGATTGTTTTGACATCAAAATACAAACTCCTGAAGACATGGATAATGGCATATGTGAAGTGTGCATCACACAACTGCGGAATGCTGTCAACTTCAAGAAGCAAGTCCTCCACACAGAAGAGCAGTTTAAGAAAAGACTCCAGGGTCgtgattttaaaaatcCCATCAAACTGGAATCACTGGAGGACCCCATTGAATCGGACCACCTCTCCGACCCTGACTTCTCCGGAGCTGAATTTGACGTGCCCATCAAAGAAGAGATGGAAGAGAAACCGAAGGCCAAGAAGCGTCAAGCCAAGCCAGCCGCTTCGCGCGCCAAGAAAGCCAAGACGGGTCCCGAGTCGTCTACTCAACGAACGGACGGCGACGCGCCCAAGCgcaagaaaaagaaaaagaaatcgGATGATAGTGCGACGCCAGAGCGCATTGAGCACAGGGTCAACCTTACCGCCATACTGCAGTACTCCAACGCCAGTCCGTTCCGCGACAAGACTGCCCGCGGCTTCTCCTGCCTCTACTGCGCCGAACATTTCCAGCACATCGACGATCTCAGGGCCCACACCGCTCAGCAGTCCGAGAAAGACAAACTCAATTCGATGATCGACTACAAACTCAGTTACAACCCCATTAAAGTCGACATCACTAATCTGGAGTGCACAGTCTGCCATCAGCCCATGAGAGATCTCGGCGAACTCAAAGATCATTTAGTCTTCGTACATAGTAAGactatctataaaaacattAAAGACATCATTCTTCCTTTCCGTCTCGAGGACGGCCACAATTTCACTTGCGTTATATGTTCCGTTGTTCACATTTCTTTCAAAAATCTCTATCATCACATGAGCAGTCATTATAGGAATTACTGTTGCAACAAGTGTGGCATCGGTTACATCACTATAGCGGCGCTACGTAAGCACAAGAAAACTCACGAGCAGGGGAACTTTCCCTGCGCGTACTGTGATAAAACCTACACGTCTTTCACAAAGAAGAGGAACCACGAAAAAGGCGTACACACCGGCGGCTGGTTAAGGAACAAATGTCCACACTGTCCGGAGATCTTTGTTAGTTACTACGACCGAAGCGAGCATCTTGTGCAGGTGCACAATGAAACCCCTGTCAAGTATCCATGTAACGCATGCAATAAAGTATACAAGAAAAAGTTTGAACTCAACCGACACATTAAGCACCATCATTTACAACAAAAGAGCTTCTTATGTGACAAATGTAACGCTAAATTCTTCTCGAAGCGCGGGCTGGTCGATCACATGTCGAGACATTCTGGGGGCGAAGTCTACACCTGCGAAATCTGCGCTAAAACCTTCGCCAGAGCGAGGACATTGAAAGAGCATTTGAGAATACACGAGGACGACAAGAGATTCCAATGTGAAGTGTGTAAGAAGACTTTTGTACAGAAATGTAGCTTGAAGAGCCACATGCGTTTGCATCAAGATCACTTGGATATTTTCAAAGAGTTTGATGATGTTAAGCACCTTATAGACGATAGAGAGCTGACCTTGAAACAAATAGCAGCAGAGAATAAAAAGAAGGCGGAAGAGGAGAAAAGGAAACAGAAGTATTGCGACATCGGAGCGACTAAAAAACGGAAAAAGGCATTAAAGGAGGAAAATGTGGGTGCTCCTAAAACGGTGTTACGAGAAAAACATATGCCAGAGATGCAGAAACAGTGGCACAACCTGACAACCTTGCTCAAGTACTCAAACGCAACGCCTTTTAAGGACAGGAACGACGCGGGTTACATATGCGCGTACTGTTTCAAAACCTACCCCGACCCTGAGGTCCTCCGGCAACACACACAAAACGACCACGTGAAGGAAAAGCCCACCTACAAAGCTGGTTCAGGCATGAGCAGCTTCGTCGCTTTCCTCGACATTGTCGACCTAAAATGCACTCTCTGCAACATGTCCATCGAAAACCTAAAGGAACTCCCCGAGCATCTAGTCAAAGTCCACGAGAAAAAGTACTTTCTCGGCGTCACCGATTACTTCCAGCCGTTCAAGTTGACAAGCGAGCAACAAATCAAATGCTGCCTGTGCACCGAATCGTTCCACAACATGAAATTGCTCATGCAACACATGAACGTTCATTACAGGAACTTCATCTGCACAACTTGCGGAGCAGGTTTTGTGAACAGTTTCAGACTTAACAGGCACGAGACCACGCACGGAAAGAAAAAGTCCAGCTTTCCTTGTCGGCATTGCGGGCAGGTCTTTGCAGCAGAGTCCAAGAAGAAAGCCCATGTCAACACTGAACATAAAGGCATAGCTGGGGACAGCGTGTGTCAGATATGCAAGGCCCGGTTTAAGAACTACTATCAGAAAACAAGACATATGATGCAAGTACACAATGTGGAGGGGATAAAGTGTGATATGTGCGACAAAAAGTTCAATTTAAAATCAAATCTCATGTTACACATGAGGAGTGTACATCTAAAGGAAAGACCTTACGAATGTTCTGTGTGCAGTATGGGTTTCTTTATTAAAAGACACATGTTAGGGCATTATATGGCGACACATACTAATGAGAGGAAGTTCAAATGCGACGTATGTGGAAAAGCATATGCTACTCAGAACAGCAGGCGGAAACATATGAAGAAAAATCACGGTATTTCTAAAAGTACGATGTTGACTCCAAATCTGACTATACCTAAATAA
- Protein Sequence
- METQNTLHSGMCRCCSSEGTFKDIKTKYHWMGDEEVYADMLTDCFDIKIQTPEDMDNGICEVCITQLRNAVNFKKQVLHTEEQFKKRLQGRDFKNPIKLESLEDPIESDHLSDPDFSGAEFDVPIKEEMEEKPKAKKRQAKPAASRAKKAKTGPESSTQRTDGDAPKRKKKKKKSDDSATPERIEHRVNLTAILQYSNASPFRDKTARGFSCLYCAEHFQHIDDLRAHTAQQSEKDKLNSMIDYKLSYNPIKVDITNLECTVCHQPMRDLGELKDHLVFVHSKTIYKNIKDIILPFRLEDGHNFTCVICSVVHISFKNLYHHMSSHYRNYCCNKCGIGYITIAALRKHKKTHEQGNFPCAYCDKTYTSFTKKRNHEKGVHTGGWLRNKCPHCPEIFVSYYDRSEHLVQVHNETPVKYPCNACNKVYKKKFELNRHIKHHHLQQKSFLCDKCNAKFFSKRGLVDHMSRHSGGEVYTCEICAKTFARARTLKEHLRIHEDDKRFQCEVCKKTFVQKCSLKSHMRLHQDHLDIFKEFDDVKHLIDDRELTLKQIAAENKKKAEEEKRKQKYCDIGATKKRKKALKEENVGAPKTVLREKHMPEMQKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKTYPDPEVLRQHTQNDHVKEKPTYKAGSGMSSFVAFLDIVDLKCTLCNMSIENLKELPEHLVKVHEKKYFLGVTDYFQPFKLTSEQQIKCCLCTESFHNMKLLMQHMNVHYRNFICTTCGAGFVNSFRLNRHETTHGKKKSSFPCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDKKFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCDVCGKAYATQNSRRKHMKKNHGISKSTMLTPNLTIPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -