Basic Information

Insect: Epiblema foenella
Gene Symbol: -
Assembly: GCA_963556455.1
Location: OY747120.1:7270370-7281507[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.037 2.9 9.7 0.8 1 23 114 137 114 137 0.93

2 12 0.0002 0.016 16.8 3.5 1 23 228 250 228 250 0.98

3 12 5.7e-05 0.0046 18.5 1.1 1 23 260 282 260 282 0.99

4 12 0.00023 0.018 16.7 4.0 1 23 290 313 290 313 0.98

5 12 3.3e-05 0.0026 19.3 0.3 1 23 319 341 319 341 0.95

6 12 1.2e-05 0.00097 20.7 3.1 1 23 347 369 347 369 0.98

7 12 4e-07 3.2e-05 25.3 1.1 1 23 375 397 375 397 0.96

8 12 1.5e-05 0.0012 20.4 0.2 1 23 403 425 403 425 0.98

9 12 1.1e-06 8.5e-05 24.0 0.6 1 23 431 453 431 453 0.98

10 12 0.00021 0.017 16.8 1.4 1 23 459 481 459 481 0.98

11 12 0.00028 0.022 16.4 3.4 1 21 487 507 487 509 0.95

12 12 7e-05 0.0056 18.3 0.1 1 23 515 537 515 537 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.037	2.9	9.7	0.8	1	23	114	137	114	137	0.93
2	12	0.0002	0.016	16.8	3.5	1	23	228	250	228	250	0.98
3	12	5.7e-05	0.0046	18.5	1.1	1	23	260	282	260	282	0.99
4	12	0.00023	0.018	16.7	4.0	1	23	290	313	290	313	0.98
5	12	3.3e-05	0.0026	19.3	0.3	1	23	319	341	319	341	0.95
6	12	1.2e-05	0.00097	20.7	3.1	1	23	347	369	347	369	0.98
7	12	4e-07	3.2e-05	25.3	1.1	1	23	375	397	375	397	0.96
8	12	1.5e-05	0.0012	20.4	0.2	1	23	403	425	403	425	0.98
9	12	1.1e-06	8.5e-05	24.0	0.6	1	23	431	453	431	453	0.98
10	12	0.00021	0.017	16.8	1.4	1	23	459	481	459	481	0.98
11	12	0.00028	0.022	16.4	3.4	1	21	487	507	487	509	0.95
12	12	7e-05	0.0056	18.3	0.1	1	23	515	537	515	537	0.98

Sequence Information

Coding Sequence: ATGGAAAGTATTAAATTAGATGTCACTACAATATGCAGAACATGCATGTGCGAAAGTTCAAATATGAAATCTGTGTTCTACAAACTGGAAGACGAGAGATCTGTGAATGATTTACTAGAATTCCTCACAAACATTAGCATTAATAGTGATGATAACCTTCCTAAACAAGTTTGCGACAAATGCGAACGGTTTTTATATACAGCTGCTTATTTTAAACAACGCTGTTTAGATGTCGAATCGAAGCTAAAGAAACTTTTAAATAACGAAGCTTGTACAAGCGTTTCTGAGATAAAACATGAAGATAGATCAGAGGAAATCACTTTAGACACTCATGAGCCATACCAGTGTTCTATTTGCTTCAGTAAGTACAGTGACACAGCTTTGTTAGAAAATCATGTGTATAATTTTCATAGAGTGAAGAAAGTGCTTAATGAATTGACATTATTTTCAAGTTCCAATGCTGATATAGTGACTCTAGAAACCATATCAGAAAAAGAAGAGAATGAGATGATCAAACAAGAATTTAATGACACAATTGATGAAGATAGTCAATTTGATAATGATTACTCTGAGCATGATTCAGAATCGGTGTTAATATTATTTCCACCGGAGAGTAAAGACGAGACTAAACTGACCATAGAGATAAATAGCAAAGACATAGATAATTTAGTAAAAAAAGAACATGAATGTGAAAAATGTAATCAGCAATTTAAATCAGCGAATTCTCTTAACATACATAAAAGAAAACATACTGAACGTAAACAAATTGAGAAGAAGTATCAATGTTCATTATGTATGCGTAAATTTATCAGTAAATCTGGTTTGACAAATCATTTAAGAGTTCATGAGACTAAGGACGATGTTAAATATACATGCGGCAGTTGTAAAAGAGAATTCAAACATAAAGCTCATTTAGACAACCACATGATAACTCTACATGCCAATGAAAAAGGTTTCAGTTGTGATTATTGTCCGAAAAACTTTGCGACACAAGAGAGTTTGGAGATTCATAAGGATTTGCATAAAATTGATAAGAAGCATACATGCCAATATTGCAATAAGGCATTTTATATGTTGTCAACATTGACTGACCATATCAGaaccCACACTGGCGAGAAACCATATCTTTGCTCGACCTGCGGTCGGGGCTTCAGTCAGAAGACCAACCTGGCCCAACACATGCGACGCCATCTTGGTCTCAAGCCCTTCCCATGCGAAATATGTACGCAGAGATTCGTGTCAAAAGGCGAGCTAGTGGCTCATACGCGGAAGCACAGCGGCGCTCACCCGTTCATCTGTGACGAATGCGGTAATGGGTTCACGACATCGTCGTCGCTGGTGAAGCACAGACGGACACACAGTGGGGAGAGACCTTACGCTTGCGACTTGTGCCATATGAGATTCGCGGCGTCAGGGACGCTGAAGAACCACCGCCGGACACACACGGGGGAGAAGCCCTACCAATGCTCCCACTGTGAGAAAGCCTTCGTGCAGAAGAATGATCTCGTCTCGCATGTCCGATGTCACACAGGCGAGCGACCGTTCGTATGTAACGTGTGCGGCAGCGCCTTCCGAAAACCGGCCGCGTTACGGAGCCACGCGAAAATGCACGCTAGAGACAAGGAGATAATGCCTTACTGA
Protein Sequence: MESIKLDVTTICRTCMCESSNMKSVFYKLEDERSVNDLLEFLTNISINSDDNLPKQVCDKCERFLYTAAYFKQRCLDVESKLKKLLNNEACTSVSEIKHEDRSEEITLDTHEPYQCSICFSKYSDTALLENHVYNFHRVKKVLNELTLFSSSNADIVTLETISEKEENEMIKQEFNDTIDEDSQFDNDYSEHDSESVLILFPPESKDETKLTIEINSKDIDNLVKKEHECEKCNQQFKSANSLNIHKRKHTERKQIEKKYQCSLCMRKFISKSGLTNHLRVHETKDDVKYTCGSCKREFKHKAHLDNHMITLHANEKGFSCDYCPKNFATQESLEIHKDLHKIDKKHTCQYCNKAFYMLSTLTDHIRTHTGEKPYLCSTCGRGFSQKTNLAQHMRRHLGLKPFPCEICTQRFVSKGELVAHTRKHSGAHPFICDECGNGFTTSSSLVKHRRTHSGERPYACDLCHMRFAASGTLKNHRRTHTGEKPYQCSHCEKAFVQKNDLVSHVRCHTGERPFVCNVCGSAFRKPAALRSHAKMHARDKEIMPY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289882;
90% Identity: -
80% Identity: -