Basic Information

Insect: Epiblema foenella
Gene Symbol: -
Assembly: GCA_963556455.1
Location: OY747118.1:14372413-14379552[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3e-06 0.00023 22.6 1.0 1 23 262 284 262 284 0.99

2 15 8.1 6.4e+02 2.3 4.8 1 23 294 316 294 316 0.94

3 15 8.5e-05 0.0068 18.0 0.7 1 23 322 344 322 344 0.99

4 15 3.1e-06 0.00024 22.5 1.3 1 23 350 372 350 372 0.97

5 15 5.4e-06 0.00043 21.8 2.2 1 23 378 400 378 400 0.98

6 15 0.00019 0.015 16.9 3.8 1 23 406 428 406 428 0.99

7 15 9.3e-05 0.0074 17.9 0.7 1 23 434 456 434 456 0.99

8 15 4.1e-06 0.00033 22.1 2.9 1 23 462 484 462 484 0.99

9 15 6.2e-06 0.00049 21.6 0.7 1 23 490 512 490 512 0.98

10 15 7.3e-06 0.00058 21.4 1.0 1 23 518 540 518 540 0.98

11 15 0.00035 0.028 16.1 5.4 1 23 546 568 546 568 0.99

12 15 1.4e-05 0.0011 20.5 1.8 1 23 574 596 574 596 0.98

13 15 0.00041 0.033 15.8 2.6 1 23 602 624 602 624 0.98

14 15 3.9 3.1e+02 3.3 0.1 7 23 636 653 630 653 0.84

15 15 0.00015 0.012 17.3 0.8 1 23 658 680 658 680 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3e-06	0.00023	22.6	1.0	1	23	262	284	262	284	0.99
2	15	8.1	6.4e+02	2.3	4.8	1	23	294	316	294	316	0.94
3	15	8.5e-05	0.0068	18.0	0.7	1	23	322	344	322	344	0.99
4	15	3.1e-06	0.00024	22.5	1.3	1	23	350	372	350	372	0.97
5	15	5.4e-06	0.00043	21.8	2.2	1	23	378	400	378	400	0.98
6	15	0.00019	0.015	16.9	3.8	1	23	406	428	406	428	0.99
7	15	9.3e-05	0.0074	17.9	0.7	1	23	434	456	434	456	0.99
8	15	4.1e-06	0.00033	22.1	2.9	1	23	462	484	462	484	0.99
9	15	6.2e-06	0.00049	21.6	0.7	1	23	490	512	490	512	0.98
10	15	7.3e-06	0.00058	21.4	1.0	1	23	518	540	518	540	0.98
11	15	0.00035	0.028	16.1	5.4	1	23	546	568	546	568	0.99
12	15	1.4e-05	0.0011	20.5	1.8	1	23	574	596	574	596	0.98
13	15	0.00041	0.033	15.8	2.6	1	23	602	624	602	624	0.98
14	15	3.9	3.1e+02	3.3	0.1	7	23	636	653	630	653	0.84
15	15	0.00015	0.012	17.3	0.8	1	23	658	680	658	680	0.98

Sequence Information

Coding Sequence: ATGGACTTGATGCATTCGTGTCGCTGCTGCCTGCGGTGTCCTGCGGACAGGGACCTGACGACGCCGTACACACATCTAGGCACTACGGAGATATATTCGGACATGCTCAAAGAATGCTTCGATTTACATCTGACAGAGGGCGGCGCCGGGTGGTGCGGGATCTGCTCCGCGTGCGCGGGCCGCCTGCGAGACGCGAGCGACTTCAAGCTGCAAGTGCAGCGCAGCCAGGCGGAGCTGCGGGCGCGGCTGCAGGGAGCTCTGCGGGTCAAAGAGGAAGAACCCGCAGTGGAGCCAGAAACTGAGGATGGAGACGGGAGCAGTGAGGAACCTGTGTCAGatgAAGAACCCTCCGTCAAACCAGAGACGCTGGACACAGAGACAGATGCAGTGCTCGGGTCAGAAATGGCGGACGGAGCCGGGGCGAGTGGCGACGAGCCCATGTCGCatgaAGAGCCCCGAGTCGAGGCAGGGATGGCGGCCGCAGGTGAGGCAGCTGACGATTTGACGGACTCGGAGCGGACAGTCAAGGCGGAGGAGTCGGAGCCGAGCGACGAGGACAGCATATCGCTGTCGCTGGACGGCTGTGCCGGACGGCCCGTGTCCGCCCTCGCCAGCTCGCAGCTCGCCATGACATGTTCCGTGAGGCTCGAGCGCCTCCGCGGCGATGAGGCGCCGCACGCGAGCCACACGAGCCTCGCGACATTACACGAGTCGAGGCGAGCGAGTCGTATGAAGGAAACCCACGATAACACCGGCACCGCCGGGCTCCGCGCCGAGGAAGCGTACACATGCGATACTTGCGGGGAACACTTCACAGGGAAGTCGAGTTTAATCGCGCACGTGCGGAGACACCTCGCACAGGACGAGTCCGCGGCGACGTACTCTTGTGGAACATGTTCGGAACAGTTCTCCTGTAAAAACCTCTTCGCTAGACACACACATGCCCACACAGGCCAGGAAACCTACGTGTGCGATATGTGTAATAAGCAATTCAGGGCAAAGTCTATTTTAATCAGACATATCAAAACACATGTGGAGCTGAAACGGTATTCGTGCGGAGTTTGtagtaaatcatttaaaaagagCTCACAATTAAAGAGACACGAACTGATTCACACCGGAGTTAAACCGTACAGTTGTCGAGAttgtaagaagcgatttacacgaaaaggtaatttggatgtacataaaagaattcacactggagtaaaaccgtacagctgtggagaatgtcagaagcaatttacaacaaaacaatgtttagattggcatacaagaactcacactggagtaaaaccgtacagctgtggagaatgtaagaagcgatttgCACGAAAAGGTGtgttagatgtacataaaagaactcacacaggagtaaaaccgtacagctgtgtggaatgtaagaggcaatttacgcaaaaaagtaatttagataagcatacaagaactcacactggagtaaaaccgtacagctgtggagaatgtaagaagcgatttgcacgaaaaggtaatttagatgtacataaaagaattcacactggagtaaaaccgtacagctgtggagaatgtaagaagcgatttacacgaaaaggtgatttagatgtacataaaagaattcacactggagtaaaaccgtacagctgtggagaatgtaagaagcaatttacaaaaaaacaacatttagattcacataaaagaactcacactggagttaaaccgtacagctgtgtaGAATGTAAGAAACAATTTGcaagaaaatataatttagatgtacataaaagaactcacacagtagtaaaaccgtacagctgtggagaatgtaagaagcaatttacagcaaaatatcatttagatgtacataaaagaattcacactggagatACACCGTATAGGTGTGAAGTATTTAACAAGCCGTTCAGGACTAAAGCCGATGTAGTGAGACACACTGGAAGAGTTCACAGTGAAGAACAGTACATGTGTGAAATATGCGAATCATTGTTTTCAAGTAAATCAAGTTTAACCAAACATACTCAAATTCATATAAATAGGAATTCATAG
Protein Sequence: MDLMHSCRCCLRCPADRDLTTPYTHLGTTEIYSDMLKECFDLHLTEGGAGWCGICSACAGRLRDASDFKLQVQRSQAELRARLQGALRVKEEEPAVEPETEDGDGSSEEPVSDEEPSVKPETLDTETDAVLGSEMADGAGASGDEPMSHEEPRVEAGMAAAGEAADDLTDSERTVKAEESEPSDEDSISLSLDGCAGRPVSALASSQLAMTCSVRLERLRGDEAPHASHTSLATLHESRRASRMKETHDNTGTAGLRAEEAYTCDTCGEHFTGKSSLIAHVRRHLAQDESAATYSCGTCSEQFSCKNLFARHTHAHTGQETYVCDMCNKQFRAKSILIRHIKTHVELKRYSCGVCSKSFKKSSQLKRHELIHTGVKPYSCRDCKKRFTRKGNLDVHKRIHTGVKPYSCGECQKQFTTKQCLDWHTRTHTGVKPYSCGECKKRFARKGVLDVHKRTHTGVKPYSCVECKRQFTQKSNLDKHTRTHTGVKPYSCGECKKRFARKGNLDVHKRIHTGVKPYSCGECKKRFTRKGDLDVHKRIHTGVKPYSCGECKKQFTKKQHLDSHKRTHTGVKPYSCVECKKQFARKYNLDVHKRTHTVVKPYSCGECKKQFTAKYHLDVHKRIHTGDTPYRCEVFNKPFRTKADVVRHTGRVHSEEQYMCEICESLFSSKSSLTKHTQIHINRNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -