Efoe017115.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747102.1:4744000-4758577[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 10 8.0 1.4 1 23 412 434 412 434 0.96 2 18 0.0084 0.67 11.7 0.1 3 19 443 459 441 461 0.90 3 18 0.00038 0.03 16.0 1.4 2 23 473 494 472 494 0.96 4 18 0.00054 0.043 15.5 0.1 3 23 502 522 501 522 0.97 5 18 1.3 1e+02 4.8 4.5 1 15 530 544 530 553 0.73 6 18 1.1e-06 9e-05 23.9 2.8 1 23 558 580 558 580 0.97 7 18 0.00013 0.01 17.4 3.8 1 23 587 609 587 609 0.98 8 18 4.3e-05 0.0034 18.9 2.0 3 23 617 637 615 637 0.98 9 18 3.7e-05 0.003 19.1 2.5 1 23 643 665 643 665 0.98 10 18 0.00014 0.011 17.3 2.0 1 23 755 777 755 777 0.99 11 18 1.4e-05 0.0011 20.5 2.9 2 23 785 807 784 807 0.94 12 18 0.00017 0.013 17.1 2.3 2 23 816 837 815 837 0.97 13 18 0.00015 0.012 17.2 0.4 2 23 844 865 843 865 0.96 14 18 0.43 34 6.3 4.2 1 23 872 895 872 895 0.94 15 18 9.6e-07 7.7e-05 24.1 0.1 1 23 900 922 900 922 0.97 16 18 4.1e-05 0.0033 19.0 0.3 1 23 929 951 929 951 0.98 17 18 0.17 14 7.6 4.3 1 23 957 979 957 979 0.98 18 18 1.5e-06 0.00012 23.5 1.2 1 23 985 1007 985 1007 0.99
Sequence Information
- Coding Sequence
- ATGCAGGTAGGTATAAAAGACGCTTTGGACATTGTCAGCACAGTTTCGGAGGATGGCTCGTTTGATCACGGGGCCCACGGCGACGACAGGACCGTTAATGAAAAAGACATCAGTGGAGATACGAGTAATAGAGACAATGAACACAATAATCATGGAAATTATGGCCTGAATAGCGGCGAAGGAGCTGGTAATGATGAAAGCGCGGGAAGTGAAAATGACGCACGCAATGATAAAGGCAATGATGGCAACGACCATGGCATCAATGAAGACGAAGGTAGCGATGATAAGGACACTCCTAATTCTGGTGCCGATCATGAAGGCGCGGGAAGCGAAAATGAAGCAAATGTTAATAATGGAGTCAATCCTAACAACGCTCATGTCGGCAAAGGCACCGATGGAAATTCAGGTGAAAATGAAACAGACATTGACAAGGCCAACAATGACAATCATGGCGAAAACAGTGGAAACGACTCGGTCACTAATCATGCTAATGAAGACGCAAAAGTTGCTGGTCGCTACAGGCGTCAGTTACATGGAGGAAACCAAGGCGGTCGCGGTGGCATTGGTGGTGGTAGAGGCGGATACAATGGTGGCAAAGGCGGTCGGAATCTCGGCTTTGGGAAGGGTGGTCGCTTCCGCCGTTCAACAGGCAAAAGCGATGATACCAGCAGTAGTAGTTCAGAAAGCGACGAAGGCACTGACACCTGTGCTGATAAGCATAACGACCATAAAAAACACGGAAAGGGTGCCAGTGGAAAAGACGTAGGCAAACAAGCATCATATGAAGGAGATAATAAAGGACGGCATAAACGTGGCAGTGGAAAAGGCGATCAACATCCAGGTTCCGGTAAGGGTGGTCAACATCCAGGTTCGGATAAGGGTGGTCAACATCCAGGTTCCGGTAAGGGTGATCAACATCCAGGTTCCGGTAAGGGTGATCAACATCCAGGTTCTGGTAAGGGTGATCAACATCCAGGTTCCGGTAAGGGTGATCAACATCCAGGTTCTGGTAAGGGTGGTCAACATCCAGGTTCGGATAAGGGTGGTCTACATCCAGGTTCGGGTAAGGGCGGTCAACATCCAGagGATTTAGACACTAACATATGTGATGATACTCCTTATGAAGAAGACACAACAATCTACAGTCCCATTACAAAGGTGTTTCATTCAGAACCTAGGAAAAAATATGCAAAGCCAGTGTTAAAGTTGAAGAAGAATAGACGAAAATTTCAATTTACTTGTGAATTATGTTACAAAAAATTTGGCTATAGAGAACGCTATGAAGCACACAAGTTGGAGCATGAAGGAAAACCTACCGCAATATACTGTGCACCATGTAACAAGACCTTTTCGACCTGGGGCGGGCTGAAGCGGCACAACGACTGTGAGCACTCGCGACTCACGGTCGACCAGCTCACCTGCAAACTGTGCTCCAAGGTGTTCAAAAGCTCGCGCACACTGAGCATACACCGCAGCATCCACGGAGAGAGGAAGCTGAGGATATGCGACGTTTGCGGGAAGGGATTCAAAAGTGATTTGACTTTGAAGGCTCACCTAGAAACGCATATAGAGAACCGAGAGCGCCGCTACACCTGCCAACATTGCGGCAAGAAGTTCCTCAGCAAGAAAACTTGCGCATCCCACGCATCTCGGCGACACAGCGACCGACGTTTCATCTGCCACCACTGCAACTACCCTTTCACAGACAAGAGCAACCTCGCCAAACACATTTTAATACACGAAGGAAAACAGCCATTACACAAATGTGACTTGTGTCACAAAACATTCGCAGCGCAATCCTCCCTAGTGATACACAAAAGGACACATACTGGTGAAAAGCCGTTCGGTTGTAGTTATTGCCCGAAGAGTTTCTCGAATAAACGCATGTTGGTGGACCATCACAGAATACATACTGGGGAGAAGCCGCATAAATGCGCGGTTTGTGAACAGAGTTTTACGCAGCGCGGGACTATGAAACGGCATATGAAAGTGCATGATAGAATATACTTGGAAGTTAAAAATGAGACCAGAGAGGAAGATACTTGGAGTGAGAAGAGTAGAAATGAGAATAAGTTGGAttcctttttaaaaattgaaatagATGCTAAAGTGGAAGAAGTACTCAGTGATATTAACCATGATGTCACTGGTACAGATGCTCCGGACCCAGATTTAGAGGATATTGAAGATCATATTGAGGAAACTCAAGTGAGCAAAGCTGAACTAAGACATTCAACAGCAAGGAATTACCAGCCCAGAAACTTCAAGTGTGAACAGTGCAATAGAAAGTTTTCCTTCAAAGAGCGTTTGGAAGGCCACATGTTAACTCATGAAGGGAAAAATGCACCAATCGAGTGTAAGGAGTGCAACAAAACATTCACGACCTGGGAAGGCCTGCACCGACACATAAAGGCGTGCCATTCGCGACTCTCCTTCAAGGATGTGACTTGTCAAATCTGCTCCAAAGTGTGCAAGACTACTGATACGCTGAGGGTTCATTTGAGAATGCATAAAGAGCGGCGAGAGAAAGTGTGTGACGAGTGTGGAAAAACGTTTAAAAGCGATGTCACATTTAAGAACCATTTAGCGATCCATACCAACCGCTCACGAAACTACCCCTGCATACATTGCGGCAAAACGTACATCAACAAGAAAACCTGCGCTAGACACATCTCCCGTCGCCACACCAACAAAAGATTCATATGCGCGTACTGCGACTACGCCTTCACCGACAAAGGCAACCTCATCCGACACATAATGATCCACGAAAACCGACACCCGAAGTACATATGTGATATATGCTCAAGGTCACTGACCTCCCAAGCCTCGCTTACAGTCCATAGAAGGATGCATACCGGTGAAAAGCCTTTTAGTTGTACACATTGTTGTAAGAGGTTCTCTGAGCGGGCGTGGTTGGTGGAGCATGAGAGGAACCATACAGGCGAGAAGCCTTTTCAATGTACTGTTTGCGAGCTAAGGTTTTCACGGAGAGGGTCGCTGAGACGGCATTTGAGGGTGCATAATATGTGGGAGGGTTGTAAGAGGAAGAGTCGGGGCGGCCCGTGA
- Protein Sequence
- MQVGIKDALDIVSTVSEDGSFDHGAHGDDRTVNEKDISGDTSNRDNEHNNHGNYGLNSGEGAGNDESAGSENDARNDKGNDGNDHGINEDEGSDDKDTPNSGADHEGAGSENEANVNNGVNPNNAHVGKGTDGNSGENETDIDKANNDNHGENSGNDSVTNHANEDAKVAGRYRRQLHGGNQGGRGGIGGGRGGYNGGKGGRNLGFGKGGRFRRSTGKSDDTSSSSSESDEGTDTCADKHNDHKKHGKGASGKDVGKQASYEGDNKGRHKRGSGKGDQHPGSGKGGQHPGSDKGGQHPGSGKGDQHPGSGKGDQHPGSGKGDQHPGSGKGDQHPGSGKGGQHPGSDKGGLHPGSGKGGQHPEDLDTNICDDTPYEEDTTIYSPITKVFHSEPRKKYAKPVLKLKKNRRKFQFTCELCYKKFGYRERYEAHKLEHEGKPTAIYCAPCNKTFSTWGGLKRHNDCEHSRLTVDQLTCKLCSKVFKSSRTLSIHRSIHGERKLRICDVCGKGFKSDLTLKAHLETHIENRERRYTCQHCGKKFLSKKTCASHASRRHSDRRFICHHCNYPFTDKSNLAKHILIHEGKQPLHKCDLCHKTFAAQSSLVIHKRTHTGEKPFGCSYCPKSFSNKRMLVDHHRIHTGEKPHKCAVCEQSFTQRGTMKRHMKVHDRIYLEVKNETREEDTWSEKSRNENKLDSFLKIEIDAKVEEVLSDINHDVTGTDAPDPDLEDIEDHIEETQVSKAELRHSTARNYQPRNFKCEQCNRKFSFKERLEGHMLTHEGKNAPIECKECNKTFTTWEGLHRHIKACHSRLSFKDVTCQICSKVCKTTDTLRVHLRMHKERREKVCDECGKTFKSDVTFKNHLAIHTNRSRNYPCIHCGKTYINKKTCARHISRRHTNKRFICAYCDYAFTDKGNLIRHIMIHENRHPKYICDICSRSLTSQASLTVHRRMHTGEKPFSCTHCCKRFSERAWLVEHERNHTGEKPFQCTVCELRFSRRGSLRRHLRVHNMWEGCKRKSRGGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -