Efoe036434.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747119.1:9634327-9638026[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0017 0.13 13.9 2.2 1 23 45 67 45 67 0.98 2 22 0.79 63 5.5 3.7 1 23 73 95 73 95 0.92 3 22 0.0018 0.15 13.8 6.6 1 23 101 123 101 123 0.98 4 22 0.00042 0.033 15.8 2.5 1 23 129 151 129 151 0.96 5 22 0.91 73 5.3 5.6 1 23 159 181 159 181 0.96 6 22 1.3e-05 0.001 20.6 1.5 1 23 187 209 187 209 0.97 7 22 3.8e-05 0.003 19.1 0.4 2 23 216 237 216 237 0.96 8 22 0.00024 0.019 16.6 2.6 1 23 243 265 243 265 0.97 9 22 0.0011 0.085 14.5 3.3 1 23 271 293 271 293 0.98 10 22 3.3e-06 0.00026 22.4 1.6 1 23 299 321 299 321 0.97 11 22 0.0037 0.29 12.9 1.9 1 23 540 562 540 562 0.98 12 22 0.081 6.5 8.6 2.6 1 23 568 590 568 590 0.92 13 22 1.1e-07 8.4e-06 27.1 3.2 1 23 596 618 596 618 0.98 14 22 0.00097 0.077 14.7 2.8 1 23 624 646 624 646 0.95 15 22 0.56 45 6.0 4.1 1 23 654 676 654 676 0.96 16 22 7.5e-06 0.0006 21.3 1.8 1 23 682 704 682 704 0.97 17 22 8.3e-05 0.0066 18.0 0.7 2 23 711 732 711 732 0.96 18 22 0.00013 0.01 17.4 2.0 1 23 738 760 738 760 0.97 19 22 0.00053 0.042 15.5 4.2 1 23 766 788 766 788 0.98 20 22 2.9e-06 0.00023 22.6 4.5 1 23 794 816 794 816 0.98 21 22 0.00021 0.017 16.8 2.9 2 23 822 843 821 843 0.96 22 22 3.2e-08 2.5e-06 28.8 4.4 1 23 847 869 847 869 0.98
Sequence Information
- Coding Sequence
- ATGATGCTTCAAATATCCAATCTATCTACTCACATGCAGGAAAACGCATTGTTGAGAAGAACTTTCAAGTCCAGAAAGAAGAAACAAAAAGCCACTGGCACTATTAACGATgagaatgaaaaaaaagaaaaatacgtATGTGATATGTGCAACAAAGAGTTTTCAATGAGGAAGTGTTTGGTCGGTCATATCAAATACCATATGCACAAAAAGCCATTCTATTGCAGCTTCTGCGATAAGAAATTTTCGTGTGAGACGTATGCGACCGTGCACGAGCGCATACACACAGGTGAGAAACCATACAGTTGCAACATCTGCCAGAAGCAGTTCAGGTGTTCTAGCCATCTAGACAAGCACCAACGCATTCATACCGACGATAAACCGTATTCTTGCGGCGATTGTAATAAACAATTTAgagaaaaaacacatttaaagcTCCACGAGCTTCTACACAAAGGAGAGAGCGCAAAACACCACGCATGTAAGTTCTGTCCAAAGAAGTTTCTACACATGTACAAACTAACTCTACACGAGCGTTCTCACACTGGGGAGAAACCATACGCCTGCACGACGTGCGGCCAGAGCTTTAAACAGAAGTTCCAACTTGCCAGCCATACGCGATTACACACTGGAAATGAACCGCGAGTGTGCGAAACATGCGGGAAACATTTCGTAACCAAAGCGGACTTAGCTAGACACGAACTCATTCACTCAAAAACGAAACCATTTTCCTGTGACGTATGCCAGCGGCAGTTCACACAAAAAGCACACTTAAGTAGTCACAAACTTATTCACACTGGTGAGAAACCCTTTTCGTGCGACATGTGCACAAAGAAGTTCAGCTGCAAAGCTTCATTACGTGTTCATCTACGAGTTCACACTAACGAGAGGCCGTTCGCTTGTAAAATATGCGGGAGACGTTTCAAACAGAGAGGGCAAATGAAGAGGCATCAAGTGACTCATCGTGAGAGAGAGATGGAACTAGTGATAGTTAAGGAAGAATTAGACATTGCAGAGAAAGGAATATGCGCGAAAAAGGAGGCAATAGAGGAATTAGATATTGCAGAGAAAGGAAAATGCGAGAAAAAGGAGTCTATAGAGGAATTAGATATTGCAAAGAAAGGAATATGCGGGGAAAAGGAGGCAATAGAGGAATTAGACATTGCGGAGAAAGGAATATGCGGGAAAGAGGAGGCAATAGAGGACAAAACAGAATCACCGGGAAACGTGAACATGGAGGTGGTGTGTATAAAGGATGAGCCCTGGGACAGCGTGAGCGAAGCTAAAGAGGCAGGAATATACGGACACAGAATTGAAGGTCTGGTACGCCAATCGGAGTCGGTGCAGCATCCAAATATATCAATAGCGAATGttactTCATTTCGTGATGCAACGAAATTCAAAGAGCTCAGACGAAGTGATACCGATGTTGTGCCACAAACAGGACATTCAAGCTGGGATACCCTAGGCAATCAAATGATGCTACAAATATCCCGTTTTTCTACTCAGATGCATAAGATGCATGAAAACGCACTACTGAGGCGAAAATTCAAGACTAGAAAGAGAAAAGAAAAAGTCACTGGCACTGTTAACGATGAGAATGAAAATAACGAAAAATACGTATGTGACATGTGCAAAAAAGAGTTTTCAATTAAGAAGCGTTTCATCAGTCATATCAAATACCATATGTATAAAAAGCCATACTATTGCAGCATATGCGATAAGAAATTCACGTGTGAGACGTATGCGACCGTGCACGAGCGGATACACACAGGTGAGAAACCATACAGTTGCAACATCTGCGATAAACCGTTCAGGAACTCTAGCCATCTGTACAAGCACCAACGCATTCATACACACGATAAACCGCATTCATGTGATGTTTGTAACAAGAAATTTAGAGAGAAAACACAATTAAAGCTCCATGAGCTTCTACACAAAGGAGAGGAAGCTAAACAACACGCTTGCAAGTTCTGCCCAAAGAAGTTTCTACACATGTACAAACTAGCTATACACGAACGTTCTCACACTGGGGAGAGACCTTATGCCTGCATGAAATGCGGCAAGAGTTTCAAACAGAAATTCCAACTAGCCAGTCATACGCGATTACATACGGGAAATAAGCCGCGTGTGTGCGAAACGTGCGGGAAACATTTCGTAACCAAAGTGGACTTATCTAGACACGAACTCATTCACTCAAAAACCAAACCATTCTCCTGTGACATATGCGAGCGGCAGTTCACACAAAAAGCACACTTAAGCAGTCACAAACTTATTCACACTGGTGAGAAACCCTTTTCGTGCGACATGTGCACGAAGAGGTTCAGCTGCAAATCTTCATTGCGTATTCATCTACGTGTTCATACTAACGAGAGGCCGTTCGCTTGTAAAGAATGCGGGAGGTGTTTCAAACAGAGAGGACAAATGAAAACGCATCAGCGGACTCATCGTGAGAAACCTCTCATATGTAAAGTGTGTAATGAAGAATTTACAGTGAAATGCGATTTAAAGCGACACCAGAAAAGACATAAATGGGCTCACAAGTGTGATGTTTGCGATAAGAATTTTAGAGATAAATATAACTTGAACAGGCATATGCGTACGCATAGTGAGAAGTCTGAAGATAATGAGAATGCTAATGATGTGTTATCTGTGGAAATAGATTCGCCTTAG
- Protein Sequence
- MMLQISNLSTHMQENALLRRTFKSRKKKQKATGTINDENEKKEKYVCDMCNKEFSMRKCLVGHIKYHMHKKPFYCSFCDKKFSCETYATVHERIHTGEKPYSCNICQKQFRCSSHLDKHQRIHTDDKPYSCGDCNKQFREKTHLKLHELLHKGESAKHHACKFCPKKFLHMYKLTLHERSHTGEKPYACTTCGQSFKQKFQLASHTRLHTGNEPRVCETCGKHFVTKADLARHELIHSKTKPFSCDVCQRQFTQKAHLSSHKLIHTGEKPFSCDMCTKKFSCKASLRVHLRVHTNERPFACKICGRRFKQRGQMKRHQVTHREREMELVIVKEELDIAEKGICAKKEAIEELDIAEKGKCEKKESIEELDIAKKGICGEKEAIEELDIAEKGICGKEEAIEDKTESPGNVNMEVVCIKDEPWDSVSEAKEAGIYGHRIEGLVRQSESVQHPNISIANVTSFRDATKFKELRRSDTDVVPQTGHSSWDTLGNQMMLQISRFSTQMHKMHENALLRRKFKTRKRKEKVTGTVNDENENNEKYVCDMCKKEFSIKKRFISHIKYHMYKKPYYCSICDKKFTCETYATVHERIHTGEKPYSCNICDKPFRNSSHLYKHQRIHTHDKPHSCDVCNKKFREKTQLKLHELLHKGEEAKQHACKFCPKKFLHMYKLAIHERSHTGERPYACMKCGKSFKQKFQLASHTRLHTGNKPRVCETCGKHFVTKVDLSRHELIHSKTKPFSCDICERQFTQKAHLSSHKLIHTGEKPFSCDMCTKRFSCKSSLRIHLRVHTNERPFACKECGRCFKQRGQMKTHQRTHREKPLICKVCNEEFTVKCDLKRHQKRHKWAHKCDVCDKNFRDKYNLNRHMRTHSEKSEDNENANDVLSVEIDSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -