Efoe038254.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747122.1:923859-936728[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00063 0.05 15.3 0.1 3 23 92 112 90 112 0.97 2 18 1.4e-05 0.0011 20.5 2.1 3 23 120 140 119 140 0.97 3 18 6.6e-05 0.0053 18.3 2.1 1 23 146 168 146 168 0.97 4 18 0.0057 0.45 12.3 4.9 1 23 174 196 174 196 0.97 5 18 3.2e-05 0.0025 19.3 3.1 2 23 215 236 214 236 0.97 6 18 0.14 11 7.9 0.2 1 13 242 254 242 257 0.87 7 18 9.6e-06 0.00077 21.0 2.7 1 23 259 282 259 282 0.98 8 18 5e-05 0.004 18.7 3.1 2 23 415 436 414 436 0.97 9 18 3.8e-06 0.0003 22.3 1.7 2 23 439 460 438 460 0.96 10 18 2.3e-06 0.00019 22.9 0.8 1 23 466 488 466 488 0.98 11 18 1.5e-05 0.0012 20.4 1.9 1 23 494 516 494 516 0.98 12 18 1.8e-06 0.00014 23.3 0.4 1 23 522 544 522 544 0.98 13 18 1.1e-06 8.7e-05 24.0 2.0 1 23 550 572 550 572 0.98 14 18 1.8e-06 0.00014 23.3 1.7 1 23 578 600 578 600 0.96 15 18 1e-05 0.0008 20.9 3.6 1 23 606 628 606 628 0.96 16 18 0.32 25 6.8 0.1 2 23 647 670 646 670 0.87 17 18 1.6e-05 0.0013 20.3 2.5 1 23 676 698 676 698 0.99 18 18 3.5e-05 0.0028 19.2 8.7 1 23 704 726 704 726 0.98
Sequence Information
- Coding Sequence
- ATGTCGTCCCATTATTTATCAGTAAAACCAGAATTCGAATGTTCTCCTGTTGCGAACAATAGCGATAATACTCTGCAGGCTGGAAGGCAGAATCTCATTGGGGTTCATAGCCAGGCTCCATATAgcgaaattaaaaaagaagcgTATCAAAATGCAAGTGTCGATGTGGGAGCAGCGGCCGCCGAATCGAATACAATTGGGCAAACAGACTCCGAAGTTAAGGCAAAAGAGCCTCTTCGTGTGGCAACACCAGGCTCACACCGCAGATGGGCGTGCCCGGAGTGCGGCAAGGTGTCGTGGTCGCCGGCGCACCTGCGCGTGCACCGGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGAGTGCGGCGCGCGCTTCCGCACCGCCGGCAACCTGGCGCGCCACCTGCGCGCGCACCGCGGCGAGAAGCCGTTCGCGTGCCGCCACTGCGCGAGGAGGTTCACCCAAAAGTCAGTGCTAATCAAGCACATCCGAATCCACACAGGCGAGACACCCTACGCCTGCGACATCTGTCACAAGCAGTTCTCCCGCAGCTTCACCCTGGCCTGCCACCGCCGTGTCCACGGCGACGCCATCGGAGCCCCGGCCCGGCCGGAGCCCCTGCCCCCGGAGAAGTGGACCTGCGACGTCtgcaacaaaacatttaagaaCAAATCTTACAGGCATGCGCACATGCTCACACATACCCGGACTAAGGAACACCAGTGTCAAGTGTGCGAAAAAAAGTTTTCTAGTGAAGGCGAAATGCCTTACCAATGTAATGTATGTTTTAAGAGGTTTTCCAGAAGCTTCACTTTGGAGAATCATTTGAAGCGAATTCATAAGAAAGAGAAATCTGAAAAATCTGAGGTGATGTGTGATATGAAGCCGATTTGGTGTGAGAAATGTGATAATTGGTACAATAGTAAAGAGTTTTACGTTCATGAATGTGGTAAAGgagataaatttaattttagtgaTGTTCTTGAAGAAAATGAACCAGAAATTGATTATAGTGAGCATGAAGAGAATGATAATCAATTTGTTGAAGTTAAAGAAGAATTTCGAATAGAAGAGATAGAAAATgatcaaattgatgaatttaagCTTGAAAATGAAAAAGATAGAGTAATAAATAATGAGGTAGAACTGACTATAAAATATACTGACACAGATTTAATAACCAATGAAGACTTGAAAATAGTTAACAAGAAAATTGCAAAAGTACGCAAAATATGGACGTGTAGCCTGTGCAAAGAGACTTTTAGAAAGAAATCTCAATACCAGACGCATTTGAAAACTCACGACACAAGCTGCGAGATATGTAAAAAACACTTCAACACCAACGGGAACCTTGTCAGGCATATGCTCATACATTCAAATATCAAACCATTCCCTTGCAACATCTGCAACAAACGGTTCACACAAAAGAGCGTCCTGGTCAAGCACGAAAGAATTCACACAGGCGAACTACCCTACACCTGCGATATATGCAACAAAAAATTCGCCCGTAGCTTCACATTGCTAAATCACAAGAAAGTCCACAGCACAATTAAACCGTACTCCTGTCAGTATTGCCCGAAAGCGTTCACTCAACGGAGCGCTCTGATAATCCATGAGAGGAATCATACGGGAGAGAAACCATACACCTGCGACATATgcaacaaaaagtttactagtAACAGTACTTTGACCAGTCATAGTAGGATTCATAACGGCGTCAAGCCGTTTCTGTGCGAGATTTGTAACAAGCAGTTTACTAGTAGTAGTAATTTCTACAGCCATATGAGGATTCATAGAGGGGACAAGAGGCACGCTTGTGAAATATGTCAAAAGAAATTCTACACTAACAGTAGTTTGACGAAGCATAAGCGGGTTCACGAGAATAAGGTGTGCAAAGTGGTGGATATGCAAGAGGACGCGGACAAACAGTTCCCGTGCGGCGCGCGTGCGTGTCGGCGGCGGTTCGCGAGCGGCGCGCTGCTGGAGCGCCACGCGCGCGCTCACGCCGGGGACAAACCCTACGAGTGCGAGCAATGCCACAAGAGATTCGGCCTCAGCGGCGACTTGAACCGCCACCGGCGAACGCACACTGGGGAAAAGCTTTACTCGTGCCATATCTGCCACAAACGGTTCACACGGAGCGGCACGCTCAAACATCACCTCAAGTTACACGAGACCACCACAGACAACACAGTCAACTCAGTCGACTGA
- Protein Sequence
- MSSHYLSVKPEFECSPVANNSDNTLQAGRQNLIGVHSQAPYSEIKKEAYQNASVDVGAAAAESNTIGQTDSEVKAKEPLRVATPGSHRRWACPECGKVSWSPAHLRVHRRVHSGERPACCHECGARFRTAGNLARHLRAHRGEKPFACRHCARRFTQKSVLIKHIRIHTGETPYACDICHKQFSRSFTLACHRRVHGDAIGAPARPEPLPPEKWTCDVCNKTFKNKSYRHAHMLTHTRTKEHQCQVCEKKFSSEGEMPYQCNVCFKRFSRSFTLENHLKRIHKKEKSEKSEVMCDMKPIWCEKCDNWYNSKEFYVHECGKGDKFNFSDVLEENEPEIDYSEHEENDNQFVEVKEEFRIEEIENDQIDEFKLENEKDRVINNEVELTIKYTDTDLITNEDLKIVNKKIAKVRKIWTCSLCKETFRKKSQYQTHLKTHDTSCEICKKHFNTNGNLVRHMLIHSNIKPFPCNICNKRFTQKSVLVKHERIHTGELPYTCDICNKKFARSFTLLNHKKVHSTIKPYSCQYCPKAFTQRSALIIHERNHTGEKPYTCDICNKKFTSNSTLTSHSRIHNGVKPFLCEICNKQFTSSSNFYSHMRIHRGDKRHACEICQKKFYTNSSLTKHKRVHENKVCKVVDMQEDADKQFPCGARACRRRFASGALLERHARAHAGDKPYECEQCHKRFGLSGDLNRHRRTHTGEKLYSCHICHKRFTRSGTLKHHLKLHETTTDNTVNSVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -