Efoe035846.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747119.1:1203345-1215709[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.3e-07 4.2e-05 24.9 1.9 1 23 112 134 112 134 0.98 2 18 4.2e-05 0.0033 19.0 0.9 1 23 140 162 140 162 0.97 3 18 5.6e-07 4.4e-05 24.9 1.2 1 23 170 192 170 192 0.98 4 18 8.3e-05 0.0066 18.0 1.3 1 23 198 220 198 220 0.96 5 18 8.8e-07 7e-05 24.3 1.2 1 23 226 248 226 248 0.99 6 18 1.8e-06 0.00014 23.3 0.2 1 23 375 397 375 397 0.98 7 18 1.5e-05 0.0012 20.4 0.3 1 23 403 425 403 425 0.96 8 18 0.015 1.2 11.0 5.4 1 23 433 455 433 455 0.98 9 18 9.4e-06 0.00074 21.0 2.6 1 23 461 483 461 483 0.98 10 18 5e-06 0.0004 21.9 0.2 1 23 489 511 489 511 0.98 11 18 2.4e-05 0.0019 19.7 4.6 1 23 517 539 517 539 0.98 12 18 7.6e-07 6e-05 24.4 0.9 1 23 548 570 548 570 0.98 13 18 2.2e-05 0.0018 19.8 0.8 1 23 576 598 576 598 0.97 14 18 2.2e-06 0.00017 23.0 1.5 1 23 604 626 604 626 0.98 15 18 7.9e-05 0.0063 18.1 0.6 1 23 632 654 632 654 0.97 16 18 5e-05 0.004 18.7 2.8 1 23 663 685 663 685 0.98 17 18 1.9e-05 0.0015 20.1 1.2 1 23 691 713 691 713 0.97 18 18 2.2e-05 0.0017 19.9 1.6 1 23 719 742 719 742 0.98
Sequence Information
- Coding Sequence
- ATGGAAGGCAGTGGTGGCATGATACAGGAGGTTGACATTAAGCAAGAACCCGAGCTGAACTCTGAGGATGAGGCAACTGAAGGCGCTGTTGAGCAACATGTCAAGCTGTTACCTGAACACATTAAATTAGAGATAGTGTACGAGCCTAACCAGGCGTGTGCGAAGGCTTCGTGTTCAGACACAGGCTCGAGGTGTGAAAGTGCATGTGGGCTGTACACCGACCAAGAGATAAGGGACGTACAGAAGCCTGAAGAGACACATGCGTCAAGTGAGAATGTAGCCGTGAAGTGGAAGCAAGGCAGTTTGTGTCAACGAGGCGACGGACCAAAGTCGTATCCCTGCGATGTATGCGGTAAACAATTTACCCATTACAGCCTGTTGACTCGCCATACGAGAGTCCACACTGGCGAAAGACCCTACTCTTGTGATATATGTAAAAAGCGATTTAAAGATGCCAGCGTTTTATTGAGGCATAAGACAATTCATACGGGCGAGGTAATAAGGCAATTTGAGTGTGAAGATTGTGGAGCAAAGTTCGCCCAATCGAGTCATTTGACAGTGCACAGACGCAGACACACGGGCGAGAGACCCTACGCCTGCGATATGTGCGACAAGCGGTTTGCGCGCTCCCACGCGCTGTATAAACATAATTTAATTCACACTGGCGAAAAGCCCTATTCATGTGAAATATGCCATAGGCCGTTCAGAGGTGCGACTGAATTGAAAAGACATATAAGAACTCATACAGTGGTTATGATGGAAGGATGTGGCCATGTCTGGCCACAGGAAGCAATGGACATAAAACAGGAGACTGAGTGGGTCTCGGGGGACGAGGCACCTCTGAAGCCTGAGCAGCATGTCATGCTGTTGCCTCAACAAATCAAGGTGGAAATAGAGTATGAACCGGCCCGAGCTTGTGTGAACGAGGAGCGTTCGTACTCGGACAGTGGGGGCTCTGCTGGCGAGAGAGCGGCGCGACTGCACGCCGCACACGAGAGTAAGGGCCTGGAGGGTGCAAAGAACGCTGAAATCTATGATGCACTGTcagTGTCAACCGAGACAGTTGCTTTGAAGCGGGGGGTATCATGGAAGCGGTCTCAAGCGAGCGATGGCACAAAGTCCTACTCCTGCAATGTATGTGGCAAACAGTTTAACCGTGGCAACGACTTGGCTCGCCACATACGCGTCCACACTGGTGAAAAACCCTACGCGTGCGATATATGTAAAAAGGGTTTTAAGGACTCCAGTGCTCTAGTCAAGCATAAAACAGTTCATACGGGCAATAAAAAAAAGCGATTCATGTGTGATATTTGTAAAAGACAGTTTGCGTGTTTGGATCATTTGACTACACACACACGAACACACACGGGGGACAAACCATTTTCTTGTGAAGTGTGTAACAAGCGCTTTGCGCGTGCGAATCATTTGGTTAAACATAATAGAACGCATACTGGCGAGAGGCCTTATGCTTGCGAAATATGTGACAAACAATTTAAAGGTTCGGGTGAACTGGTCAGACATAGACGAGTACACacaggagaaaaaccatactcATGTCATTTATGCGAAAAGAGCTTTAAACAATTGAAATCATTAACTAATCACAGAAAAATTCACACAGGCGAAGAGCTAGTTCGCCAATTCGAGTGTGAAGATTGTGGGATAAAATTCGTCCAGCCTAGTCATTTGACAGAGCACAAGCGCAGCCACACAGGCGAGAAACCGTTCGCCTGCGATGTGTGCGACATGCGGTTTCCGCGCTCCCACGCGTTAATTAAACACAAACGAATACACACTGGTGAGAGACCCTATGCCTGCGAAATATGCCACAAACAGTTCAGAGGCTCGACCGAATTGAAGAGACATATACGAATTCATACAGGTGAAAAACCATATAGTTGCGAAATATGTGACAAGCGGTTTGCGCAAATAAGTACATTATATAGCCATAACAAAGTCCACACGGGCGAGAACACAGTTAAACCATACTCTTGCGAAATATGTGGGATGAAGTTCCATCAGCTGGGTCATCTGACTGAACATAGGCGGATTCATACTGACGAGCGGCCATTCGCCTGTGATTTGTGTGAAAAGCAATTCAGGCGCTCTAACGCACTGTTAAGGCATAGACGATCGCATACAGGTGAAAAACCATATAGTTGCAAAGTATGCGAGAAGCAATTTACAGATTCGGGTAGTgttaaaaaacatattaaacgATATCACACCAACGATGTGACTTCATAA
- Protein Sequence
- MEGSGGMIQEVDIKQEPELNSEDEATEGAVEQHVKLLPEHIKLEIVYEPNQACAKASCSDTGSRCESACGLYTDQEIRDVQKPEETHASSENVAVKWKQGSLCQRGDGPKSYPCDVCGKQFTHYSLLTRHTRVHTGERPYSCDICKKRFKDASVLLRHKTIHTGEVIRQFECEDCGAKFAQSSHLTVHRRRHTGERPYACDMCDKRFARSHALYKHNLIHTGEKPYSCEICHRPFRGATELKRHIRTHTVVMMEGCGHVWPQEAMDIKQETEWVSGDEAPLKPEQHVMLLPQQIKVEIEYEPARACVNEERSYSDSGGSAGERAARLHAAHESKGLEGAKNAEIYDALSVSTETVALKRGVSWKRSQASDGTKSYSCNVCGKQFNRGNDLARHIRVHTGEKPYACDICKKGFKDSSALVKHKTVHTGNKKKRFMCDICKRQFACLDHLTTHTRTHTGDKPFSCEVCNKRFARANHLVKHNRTHTGERPYACEICDKQFKGSGELVRHRRVHTGEKPYSCHLCEKSFKQLKSLTNHRKIHTGEELVRQFECEDCGIKFVQPSHLTEHKRSHTGEKPFACDVCDMRFPRSHALIKHKRIHTGERPYACEICHKQFRGSTELKRHIRIHTGEKPYSCEICDKRFAQISTLYSHNKVHTGENTVKPYSCEICGMKFHQLGHLTEHRRIHTDERPFACDLCEKQFRRSNALLRHRRSHTGEKPYSCKVCEKQFTDSGSVKKHIKRYHTNDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -