Basic Information

Insect: Epiblema foenella
Gene Symbol: -
Assembly: GCA_963556455.1
Location: OY747105.1:17759450-17762251[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.3e-08 1.4e-05 25.9 0.0 4 41 13 50 10 52 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.3e-08	1.4e-05	25.9	0.0	4	41	13	50	10	52	0.89

Sequence Information

Coding Sequence: atGGCATCCAAAAAAAAGAGGCAGTACGATCAGCATGCACTCGAAGAGGCTGTGCAAAGAATACACAATAATGAAATAAGCCTACACAAAGCGAGTTCAACTTACCACATACCCAAAGGCACTTTGCATAATAAATTGCATGGCAAAACGCCTTTGGTGTGTAGAAAAGGCCCTGTCACTATGATTAAGAAGGATGAAGAAGACCATATAGCTACTTGGGTCATAGGCATGGCCAAAATCGGTTATCCTGTAGGACAGGATGACCTGAAGGAAACAGTAGCCCTGCTTTTCGAAAAACGAGGCCAACCAGACACAAAACCTGGCAAAAAATGGTTTCATCTCTTCATGAAGAGGCACCCTGAGATAACACAAAGGCATGCTGAGGTTATTTCAAAAGCGAGGGCGGCTGTCACCGAAGGTTCTATACGCAAATGGTTTTCGGACTTACAGTTATATCTGCAAGAACAAAATTATGAGGATATCTTGAACTGTCCAGAGCGAATCTTCAATCTCGACGAAACCGGCGTACAGTTGTGCCCAAAAACCGGAGTTATATTAGCACCCAAGAATTATCGGGCATTATATACAGTTGCATCTGGACAAGAAAAACAGTGCGTAACTGTATTATGCAATTTCTCAGCAGCGGGTGGAATAGTCCCTCCATTCGTTGTATACCCTTTAAAAAGGCTATCAAAAGAAATTGCCCAATCAATGCCTGAAGAATGGGGGATGGGGCGATCCGACACTGGTTGGATGACGGGATCGACATTCCTCCAATACGTACAAGAAATATTCCTGCCATGGCTTGAGGAACAAGACATCACTTTACCGGTAGTACTGTTCGTAGACGGCCATAAGAGTCATTTCAACATGGAGCTACACGACTTTTGTGTTGAGCACAAAATAATCTTGTACTGTCTGCATCCAAACACCACTCATATTCTCCAGCCCTGCGATGTGGGAATATTTGGCCCACTAAAAGCAGCTTGGAAAAATGCCGTACGCAAACACAAATTGAAAGAAAACTTCCAATTAACAAGGTCCAACTTTGCAAAAGTGTTTTCAAAGGCTTTTGAAAAATCAATGTCAGAGGATGTTATAAAAAGCGCATTTGAGGCGTGCGGTCTTTACCCACTCAATCCCGATGCTGTCAATTATTCAAAATGTATATCAAATAGGAGAGACGAAGTATCGAAAAATGTAAGTTTACAAGAATACAAAACAACAATCTCTGTTATAGAGAAAACTGTGAGTAAAAAGACACTTGAAAGGTATGTTCACTGCAGAGCTGAAAACAAGAAATACAGGAGTTCTCTTTTCCAATTTTGGGAAAAATGCAAGAACAAAGTTGAAGATATTATGACAACGCAGTCTAATATCGAAGATCATGATATTGCCTCGAGATCAGAAGCTGACAATAACATTGCTACAACATCAGCTCTTACACAAAAGCGTCAAGAAGAAGACTTATCGTTGACTCTTGGAATTGATTCGATTGTTGAAGGACTTCTGAATATAGAAAATCTGCCAATGGATATTGAGGAATATAATCAACTACTGGATGATGCACGTGTAAAAGAAGATATGGACAACCGGATAGACACAACTGAAAGATCTCTGAATGATCACATCAAAAGATCAAAAGCCTTGCCGCGTGGAGTTTCTTTGACATTGAACATGGACAATCAGGAAGGCACTAATGAGACATCACAAATGGACGATCATATTGAGCAGCGTATTATCCCACTGAATGGCGCACCTTTAAATGACATGGACAATCAGGAagacaatgctgagacagcacaACTGAACGACTACATTGAGAGACGTGGACTGAATGTCCCTACGAGCAGTCAGAATAATACTACTGTGACGTCAGATTTGTCTTATGGAATTTTAGAACCTGTAACATCATCTACACCTATAAATTTCAAAACAGTCATTCCCTTACCATGGTATACAGATATGGAGAATAAAACACTTGTCGACTCGGTAAGCGAAGAACCTTCTACTGCGAGTATAAATGTCAGTGACTTGTTCAAAATTCCCAATGATAAGAAAACTGTTAAATGGAAACTGTCAAACGCTTCAGCTATGCCTTTAGCCATCACATCTAAGAAGTTTAGGGAGTAtatagagaaaaaagaaaacgaaaaaatacagaaaagtAACGAAATATTGAAAAGGAAACTAGAACGAGAGCAGAAGAAAGCTGAAAAAGAACGGATAGCTAAAGAAAAGAAATCCAACGTGAAGAAAACTAAACCACGTTCAAAAAAAGATAAGGCTCTAGCTTCAGCACAGGCTGGACCATCCTACGAAGGTGATATTAGTCAACTTATAAAAAAGACCAGACACGATACTACAGAAGAGTCACAATCGTATCATACATCTTCTCCATCAGATACTGAAGaaccaataaaatataaaaatactgcGAACAAGGACGAGGCAAATAGAACACGCAAGACAGATGGAAAGGTTCAAACGAAAATTCCGGACATGGCAAACATCGATATTGAAACTTATGTTGTTGTAGAATTCAAAACGAACAAAAGAAACCGTTATTATGTGGGCGTTGTAGAAGAGTTTGATTTAGAAACTACTTTTATAAAAGTaaagtttttaagaaaaaaatcgaGTAAACTAGATGATATTTGTTACTTTGTCGAACCACCTACCGTTGACTTAACAGAAATATCAATTACAGATGTAAAAGAAATATTACCAACACCTCGTGTAGGTAGACGAGGGATGCTTTATTTTGTTGAATCGAATTTTGATCTCAATTTATGTGAATAG
Protein Sequence: MASKKKRQYDQHALEEAVQRIHNNEISLHKASSTYHIPKGTLHNKLHGKTPLVCRKGPVTMIKKDEEDHIATWVIGMAKIGYPVGQDDLKETVALLFEKRGQPDTKPGKKWFHLFMKRHPEITQRHAEVISKARAAVTEGSIRKWFSDLQLYLQEQNYEDILNCPERIFNLDETGVQLCPKTGVILAPKNYRALYTVASGQEKQCVTVLCNFSAAGGIVPPFVVYPLKRLSKEIAQSMPEEWGMGRSDTGWMTGSTFLQYVQEIFLPWLEEQDITLPVVLFVDGHKSHFNMELHDFCVEHKIILYCLHPNTTHILQPCDVGIFGPLKAAWKNAVRKHKLKENFQLTRSNFAKVFSKAFEKSMSEDVIKSAFEACGLYPLNPDAVNYSKCISNRRDEVSKNVSLQEYKTTISVIEKTVSKKTLERYVHCRAENKKYRSSLFQFWEKCKNKVEDIMTTQSNIEDHDIASRSEADNNIATTSALTQKRQEEDLSLTLGIDSIVEGLLNIENLPMDIEEYNQLLDDARVKEDMDNRIDTTERSLNDHIKRSKALPRGVSLTLNMDNQEGTNETSQMDDHIEQRIIPLNGAPLNDMDNQEDNAETAQLNDYIERRGLNVPTSSQNNTTVTSDLSYGILEPVTSSTPINFKTVIPLPWYTDMENKTLVDSVSEEPSTASINVSDLFKIPNDKKTVKWKLSNASAMPLAITSKKFREYIEKKENEKIQKSNEILKRKLEREQKKAEKERIAKEKKSNVKKTKPRSKKDKALASAQAGPSYEGDISQLIKKTRHDTTEESQSYHTSSPSDTEEPIKYKNTANKDEANRTRKTDGKVQTKIPDMANIDIETYVVVEFKTNKRNRYYVGVVEEFDLETTFIKVKFLRKKSSKLDDICYFVEPPTVDLTEISITDVKEILPTPRVGRRGMLYFVESNFDLNLCE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -