Efoe027205.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747110.1:10814330-10814980[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.6e-09 5.9e-06 27.1 0.0 8 36 22 50 20 51 0.96 2 2 9 5.5e+03 -1.6 0.0 12 22 54 64 52 65 0.82
Sequence Information
- Coding Sequence
- aTGGTACGAACTTACAAGAAAAAAAGTTCCAAAGGGAGTTGGTCTGTGGAAAGCAGGAAACACGCAATTGatgcagttttaagcaaatcAGCAGGTTACAGAAAAGCAGCTCAATTGCACGGTGTTCCACAGACCACACTGAAGCGTCACGACGCAAAAATAAGGAAGGGCGAGGTATCTCTTAATTCAGCTCCAGGTAACTTTAAACCCGTCTTTTCCAAACAAGAAGAAGAGGAGCTCGTTAATTACGTAAAAGATATGGAGAAACGATTGTTTGGATTGACAACTGTCGTCCTACGAAAACTAGCCTATCAGCTCGCAGAAAAAAATGCTAAGACTCACAATTTTAACCATGTTAAAAAGATTGCTGGCATAGATTGGTTAAAAGGCTTTATGAAACGTCACCCGGATTTATCCATTCGAGAACCAGAAGCCACGTCGGCAGCGCGAGCTATGGGTTTTAACAAAGTGGCCGTGAATAAATTTTATTCTTTGCTTGGGGAAGTATATGACAAATATAATTTAACTCCAGATAGAATATATAACTGCGACGGGACTGGAATATCATGCGTCTCCAAAACAAAGAGCAAAATTATTGCTGGAAAAGGAAGAAAACAAGTAGGCTCCCTTTCCTCTGCAGAACGAGGGTAG
- Protein Sequence
- MVRTYKKKSSKGSWSVESRKHAIDAVLSKSAGYRKAAQLHGVPQTTLKRHDAKIRKGEVSLNSAPGNFKPVFSKQEEEELVNYVKDMEKRLFGLTTVVLRKLAYQLAEKNAKTHNFNHVKKIAGIDWLKGFMKRHPDLSIREPEATSAARAMGFNKVAVNKFYSLLGEVYDKYNLTPDRIYNCDGTGISCVSKTKSKIIAGKGRKQVGSLSSAERG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00256819;
- 90% Identity
- iTF_00666456;
- 80% Identity
- -