Efoe015848.2
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747101.1:9572525-9580825[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-09 2e-06 28.6 0.0 4 41 30 67 27 69 0.89
Sequence Information
- Coding Sequence
- ATGCTCCTCGCCGGCATTTTAGCAGCACAAGGATATTTCTTAGGAAGAAAAatGGCATCCAAAAAAAAGAGGCAGTACGATCAGCATGCACTCGAAGAGGCTGTGCAAAGAATACACAATAATGAAATAAGCCTACACAAAGCGAGTTCAACTTACCACATACCCAAAGGCACTTTGCATAATAAATTGCATGGCAAAACGCCTTTGGTGTGTAGAAAAGGCCCTGTCACTATGATTAAGAAGGATGAAGAAGACCATATAGCTACTTGGGTCATAGGCATGGCCAAAATCGGTTATCCTGTAGGACAGGATGACCTGAAGGAAACAGTAGCCCTGCTTTTCGAAAAACGAGGCCAACCAGACACAAAACCTGGCAAAAAATGGTTTCATCTCTTCATGAAGAGGCACCCTGAGATAACACAAAGGCATGCTGAGGTTATTTCAAAAGCGAGGGCGGCTGTCACCGAAGGTTCTATACGCAAATGGTTTTCGGACTTACAGTTATATCTGCAAGAACAAAATTATGAGGATATCTTGAACTGTCCAGAGCGAATCTTCAATCTCGACGAAACCGGCGTACAGTTGTGCCCAAAAACCGGAGTTATATTAGCACCCAAGAATTATCGGGCATTATATACAGTTGCATCTGGATAA
- Protein Sequence
- MLLAGILAAQGYFLGRKMASKKKRQYDQHALEEAVQRIHNNEISLHKASSTYHIPKGTLHNKLHGKTPLVCRKGPVTMIKKDEEDHIATWVIGMAKIGYPVGQDDLKETVALLFEKRGQPDTKPGKKWFHLFMKRHPEITQRHAEVISKARAAVTEGSIRKWFSDLQLYLQEQNYEDILNCPERIFNLDETGVQLCPKTGVILAPKNYRALYTVASG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00654194; iTF_00654196; iTF_00654198; iTF_00654201; iTF_00654195;
- 90% Identity
- iTF_00654196;
- 80% Identity
- -