Efoe007059.2
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747097.1:13352250-13354874[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-10 3.6e-07 31.0 0.0 4 38 14 49 14 53 0.90 2 2 0.24 1.4e+02 3.4 0.0 1 14 349 362 349 369 0.83
Sequence Information
- Coding Sequence
- ATGAACCAACCTAAAAAGAAACTATTGTACACAGCCTTACAGTTACAAAATGCAATATCAGCCGTGAAAAAAGGCAAGATGTGTATTTCAGAAGCATCACGTCGATTTGGTATACCAAAAGCTACGCTGCacgacaaaataaataaaaaatatgcggAAGGTGCAACTTCGGGTGCACACACAGTTCTTACAAAAGAGGAAGAAGACCAACTAGTGAACTGGATACTTTATCTAAGCGACGTTGGTTTTCCAGTCACGAAAAACAACCTGATTAATGCAGTGCAGAAGCTTGTGTTAAACTTAAACCGAGAAAATCCTTTTAAAGGTGGCAAACCTGGTCGACATTGGTATGAGAATTTTATATCTAGACACCCGGAGCTTTCAATGAGAGTAGCACAGTGTCTGACGGCTCCAAGAGCTAGTATTTCGGAGGAATCTATACGAGCATGGTTTGGTCGCGtagaaacatatttaaaaaaagaaaacttagAAGAAGTTTTGACTGATCCACGGCGAATATTCAACTGCGATGAATCAGCATTTTACTTGAGTCCTAAAGAAAACTCTGTAATTGTaaaaaaaggcagcaatagagTTTACAGTAGAGCTGCTAATGATGAAAAAGAGTGCTTAACTGTTCTGGTGACAGTGTCAGCTGACGGAAATATGCAACCACCTTTAGCCATGTTTCCATACAAGCGAACACCAGCTAGCATTATACTAAACATGCCATCGAAATGGAGTATAGGTCGATCTGACTCAGGTTGGATGACTGGAGAAACATTCTATGAACAAATTACAAATGTGTTTTATCCCTGGctgattaaaaataatattccaTTGCCAGTCATTTTGTTCATGGATGGCCATTCATCTCACATTAACTTGGCACTGTCTGAATTTTGCCGAGAGAAAAAAATTATTCTAATAGCTCTCCTGCCAAACTCTACACACCGCCTCCAGCCACTAGACGTTGCAGTTTTTCGTCCATTAAAACACCACTGGAAAGAGCAGAGACAAACtgacaataaaaatactaagtTAAAAAGGGAGGATTTCGCAAAAGCTCTGGACGCATGCATAAAGAATGCTACACTGAATGAGGCAATAATAAATGGTTTCCGAACCTGCGGTTTGTATCCTTTTGACGCAAATAGTATTGACTATAGTAAACTTATTAAACAAGTGGAGGCAACAGACAAAAATATCGCAAATGCACCATCAAAAAATACAAGAGCAACAGCTACTTTGTTGGCAGAAGTGGAAATGAGGATTCCAGAAAAAGAACTCGAAGAATTTCGAATGTGCGAAGACACCTGGTTAGGAGATCCTAAAAATCATGGTTTATTCTATTTCtggaaaaaaaataatgatgaaTGTTTAGAAGTAGTATCTGATCACGAAGAAACACTTAATGCAAATATAGATAATATAAACAGAGATGACTTAGACTGCAACAGTGACTGGTTATGTAACTCCGAAGTTCTGAACTTGGAAGTTCAACCAGATGGCAGCTTAGCCCTGCCACTACCAGATATGCCAAATCTTACCGAACATCTAGCCCTCGACACGCCATTACCTTGTCATTCTCAAAATACTTGCGACATAACAACCCTGACAGAGTCTTCAATTCCTTTGAAGAAAGTCCTTGAAACAACAACAGTCATAGACAATAACAAGCCAACTGGCGTTGAAAATCCAGACTCACGCCACCAGTCTTCGACAAAAACCATTCTACCTGGAAACCGATCCCCTCTAATCGAAATAACAAATCTAAAAGAAACCTTAGCCCTCGACGATACGTCCTGTCTCCTCGACAGTAGTTGCAATAGAAAGCCTAATGACGACGACATCGTGGGTTCAGAGTCGCTCCATAAAACTCCATTAAAAGGGATGCAAACTGGGACTCGATCCGTTCTAACTCCATTAAAAACAGTCACTTTTGAAGATATAGCAGCTTTGCGGAACAAATCAGAGAGTACTCCCGGAAAACTTCAGGAAAAGATTATTCAGGACTCCGGTCCAAGTTGTAGCAATATCAATGTCAGCAATATAAATGTCCCGACACCTCTAAAACATATTAATACACCTTTTAAAACTGCTTTGTATTGGCCAGAAGTACCCAAAAAAGACaacaaacttaaaattaaaaggaaaCTTACGCCGACAGTTGCCACATCGGAAGAATTTATTGCGTATCAGAAAAAAATGGATGATATTAAGAAGGAAAAAGAAAgaataaaagaagaaaagaaaagtaAGAAACTTACTTCAACAAAAGATGTTCTGGCCAAAAAGAGAAAATTAACCAAAGATAACAACATTACGATGTCAAATGCAGAGCAATCCACATCTGCGGCAAATGAGAGAAATGTCGGTGGTTATGTCGTTGTTAATTATGAAGGAGAATTCTTCCCCGGAATAATAACAGAAATTAAAAGTAACGAAACTTTTGTGAAAACTATGGCGATGAGTGGATTAAATTGGAAATGGCCCAATAAAGACGATATTGTGGGTTACCAAGACGAAGAGATTGTGTGTAATATAAAATGCCCAATCCCAATCAATAAACGGGGCGTTTTTTCTGTTCCGGAAATGGACACGTTAAGAAATACTAATAAGTAA
- Protein Sequence
- MNQPKKKLLYTALQLQNAISAVKKGKMCISEASRRFGIPKATLHDKINKKYAEGATSGAHTVLTKEEEDQLVNWILYLSDVGFPVTKNNLINAVQKLVLNLNRENPFKGGKPGRHWYENFISRHPELSMRVAQCLTAPRASISEESIRAWFGRVETYLKKENLEEVLTDPRRIFNCDESAFYLSPKENSVIVKKGSNRVYSRAANDEKECLTVLVTVSADGNMQPPLAMFPYKRTPASIILNMPSKWSIGRSDSGWMTGETFYEQITNVFYPWLIKNNIPLPVILFMDGHSSHINLALSEFCREKKIILIALLPNSTHRLQPLDVAVFRPLKHHWKEQRQTDNKNTKLKREDFAKALDACIKNATLNEAIINGFRTCGLYPFDANSIDYSKLIKQVEATDKNIANAPSKNTRATATLLAEVEMRIPEKELEEFRMCEDTWLGDPKNHGLFYFWKKNNDECLEVVSDHEETLNANIDNINRDDLDCNSDWLCNSEVLNLEVQPDGSLALPLPDMPNLTEHLALDTPLPCHSQNTCDITTLTESSIPLKKVLETTTVIDNNKPTGVENPDSRHQSSTKTILPGNRSPLIEITNLKETLALDDTSCLLDSSCNRKPNDDDIVGSESLHKTPLKGMQTGTRSVLTPLKTVTFEDIAALRNKSESTPGKLQEKIIQDSGPSCSNINVSNINVPTPLKHINTPFKTALYWPEVPKKDNKLKIKRKLTPTVATSEEFIAYQKKMDDIKKEKERIKEEKKSKKLTSTKDVLAKKRKLTKDNNITMSNAEQSTSAANERNVGGYVVVNYEGEFFPGIITEIKSNETFVKTMAMSGLNWKWPNKDDIVGYQDEEIVCNIKCPIPINKRGVFSVPEMDTLRNTNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00654172;
- 90% Identity
- iTF_00654172;
- 80% Identity
- -