Efoe025683.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747109.1:5943993-5956802[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9e-10 3e-07 31.2 0.0 4 39 567 603 564 607 0.89 2 4 2.9e-11 1.7e-08 35.2 0.2 2 39 619 656 618 659 0.92 3 4 7.2e-14 4.4e-11 43.5 0.0 2 45 674 718 673 718 0.96 4 4 1.2e-17 7.1e-15 55.7 0.0 1 43 725 768 725 770 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGTCGCGGTCTCCCGCCGGTCAAGCGTGAACCGGCCTCCGAGGACGACGACTCGCAGTACGCACACGGCTTCCTCACTGATCAGATACCGTCGCTGGAGCTCCGTGCGGTGAAACTCGAGAGAGTCGATATAGACGACAATGCGTCTGCGCGCATATTACGACACCTGCAGGGCCCGGAGGGCCTGGAGGAGCTggcgccgccggcgccggcgggcCCCGCCGCGACCCCTGTCTCCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGCCGCACGCGGACACACTGAGGCAGGCGGCGGGCCCCGCCGCGACCCCTGTCTCCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGCCGCACGCGGACACACTGAGGCAGGCGGCGGGCCCCGCCGCGACCCCTGTCTCCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGCCGCACGCGGACACACTGAGGCAGGCGGCGGGCCCCGCCGCGACCCCTGTCTCCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGCCGCACGCGGACACACTGAGGCAGGCGGCGGGCCCCGCCGCGACCCCTGTCTCCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGCCGCACGCGGACACACTGAGGCAGGCGGCGGGCCCCGCCGCGACCCCTGTCTCCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGCCGCACGCGGACACACTGAGGCAGGCGGCGGGCCCCGCCGCGACCCCTGTCTCCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGCCGCACGCGGACACACTGAGGCAGGCGGCGGGCCCCGCCGCGACCCCTGTCTCCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGCCGCACGCGGACACACTGAGGCAGGCGGCGGGCCCCGCCGCGACCCCTGTCTCCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGCCGCACGCGGACACACTGAGGCAGGCGGCGGGCCCCGCCGCGACCCCTGTCTCCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGCCGCACGCGGACACACTGAGGCAGGCGGCGGGCCCCGCCGCGACCCCTGTCTCCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGCCGCACGCGGACACACTGAGGCAGGCGGCGGGCCCCGCCGCGACCCCTGTCTCCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGTCGCATGCGGAAACACTGGGTGCCATGCTCATCGATAGACACAAGACACTGCCTGGAGCAAACGACGCCGATTCCATGGACTTCATGCCTCTCCTTACTGTTAAAGACGAACCTCTCTCTGAAGGAGAGCAACACCACCTAAGTGGTTCAGACACGAGCGACTCCAGCACGCAGCCCGAACGCCGCGGCAGCCCTAAGAACTGGACGCAGCAGGACATGGAACTAGCACTAGATGCACTTCGAACACACAACATGAGCCTCACCAAGGCATCGGCGACATATGGCATTCCATCGACGACACTGTGGCAGCGTGCACACCGACTTGGGATCGACACGCCCAAGAAAGAAGGCGCCTCCAAGTCCTGGAGTGAAGCTGATTTGAGAGGCGCGCTGCATGCTTTGCGGTCGGGAGCCATTTCTGCTAACAAGGCCAGCAAGGCTTACGGCATCCCCAGCAGCACCTTGTACAAGATCGCACGGCGCGAGGGCATCCGCTTGGCGGCTCCGTTCAACGCGGCCCCCACGGCGTGGCGGAGGGCGGACCTGGAGCGGGCGCTCGCTTCCATCCGCTGTGGCGCAGCCTCTGTGCAGCGGGCAGCTTCACAATTCGGGATACCCACCGGGACGCTGTACGGGCGGTGCAAACGCGAAGGAATTGAACTGTCTCGGTCCAACCCAACACCCTGGTCCGAAGATGCCATGGGAGAGGCTTTAGAAGCTGTCAGGGTTGGCCAAATGTCGATAAACCAAGCTGCGATCCACTATAACTTGCCTTATTCGTCGCTCTACGGACGGTTCAAGAGATGTAAATATCAAAGTCCTCAAGCAATACCCCAACAGTCCATGCCAGAGATGGAGATGGAAATGGAACAGCCGCCACAGATGTACTTCCAGCATCAGATGCCGACAATGCCAGAGTATCATCAGAACTACATAGCGGAGCCGGAAATGCATGCTAATGTCATTCAGGAACCCTACGGGATGTACTATCAAGGTTGCAGCAGCAGCATTGCTACCAGCTGA
- Protein Sequence
- MPGRGLPPVKREPASEDDDSQYAHGFLTDQIPSLELRAVKLERVDIDDNASARILRHLQGPEGLEELAPPAPAGPAATPVSVKQEPAEPAVTLETLAPAPHADTLRQAAGPAATPVSVKQEPAEPAVTLETLAPAPHADTLRQAAGPAATPVSVKQEPAEPAVTLETLAPAPHADTLRQAAGPAATPVSVKQEPAEPAVTLETLAPAPHADTLRQAAGPAATPVSVKQEPAEPAVTLETLAPAPHADTLRQAAGPAATPVSVKQEPAEPAVTLETLAPAPHADTLRQAAGPAATPVSVKQEPAEPAVTLETLAPAPHADTLRQAAGPAATPVSVKQEPAEPAVTLETLAPAPHADTLRQAAGPAATPVSVKQEPAEPAVTLETLAPAPHADTLRQAAGPAATPVSVKQEPAEPAVTLETLAPAPHADTLRQAAGPAATPVSVKQEPAEPAVTLETLAPAPHADTLRQAAGPAATPVSVKQEPAEPAVTLETLAPASHAETLGAMLIDRHKTLPGANDADSMDFMPLLTVKDEPLSEGEQHHLSGSDTSDSSTQPERRGSPKNWTQQDMELALDALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGAASVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQAIPQQSMPEMEMEMEQPPQMYFQHQMPTMPEYHQNYIAEPEMHANVIQEPYGMYYQGCSSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -