Egra006985.1
Basic Information
- Insect
- Ephydra gracilis
- Gene Symbol
- -
- Assembly
- GCA_001014675.1
- Location
- JXPQ01021841.1:18993-29156[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.018 1.7 9.4 0.6 1 23 1588 1611 1588 1611 0.96 2 12 1.1 1e+02 3.9 1.0 1 23 1771 1793 1771 1793 0.94 3 12 0.00045 0.042 14.5 2.8 2 23 1796 1817 1796 1817 0.97 4 12 0.00017 0.016 15.9 0.2 3 23 1825 1845 1823 1845 0.98 5 12 2.5e-06 0.00023 21.6 5.8 2 23 1852 1873 1851 1873 0.97 6 12 2.3 2.2e+02 2.8 0.4 5 23 1886 1904 1883 1904 0.96 7 12 0.048 4.5 8.1 0.1 2 23 1943 1963 1942 1963 0.96 8 12 4.1e-05 0.0038 17.8 0.5 1 19 1969 1987 1969 1991 0.95 9 12 2.5e-05 0.0023 18.5 1.4 1 23 1999 2021 1999 2021 0.98 10 12 9.9e-05 0.0093 16.6 7.6 1 23 2027 2049 2027 2050 0.96 11 12 0.069 6.5 7.6 8.4 1 23 2055 2077 2055 2077 0.97 12 12 0.00056 0.053 14.2 4.0 1 23 2083 2105 2083 2105 0.98
Sequence Information
- Coding Sequence
- ATGGCTGAGAACGTACAGTGTCCGGTGTGCACCTTGTACCTGCATGCTGGTATGAGTCTCTCCGATCATTTGGAAACGCATCCCAAGGAACAAGTGATCAAAGCGCTCGTGCAGATGACAATCAGCGGTGCAAGCGGTGCGGCAACAAGTGCATTAGCCAGCGCACTGGTTGCGGAGAGCAAGCCAAAAGTTGAGGAGAAAGCGCTACCCGACAAGGAGGAAGAAAGTAACTCGGCTAGTTGCGCTTCTTCGGTGCAAAGCTCAACAACAATAAGCTCAAACAAAACGGCGTCAACTCTTGCTACGACCCTGAGCTATGCGGCGGATGACAACAGCGTGAATACATTGTCAACATTGTCAAGCGGTGTGACTAATCCGCCAGTGGCGGTGAATGCGAGCACATCAAACACGAATTCGAATCAGTCACATCATTCGCAGCAGCAGCCACCAAGTCATATAGGCAGTAATTCGGCATCATATCAACGTTTTGGGAATGAGAATGTTTCGAAAAAACCTAACACATCGTCAGCAGCCGTGCCAATCGCGCCAACAACTGCTGCCTCAGTGACAGCGACTGGTGCTGTGGTGAGCAAAACGAATGAAAATGCTATCCTGCCAAGAGACTTCAGCAATAGGAATTTCTCCAACGTCAATCTCTATCATCAGCAACTAACacaacagcagccacagcaCATGCAACATGCCAATGTAACCACTCTACCTCCGCCACCACCCCTACAGCTTTTCACTTATCACAACTCACAGCAGCAAGCACAACACACACACCACCAGTTGCCACAGCAGCATCAACGGCCACCACCAGCGTATGGCGCGGCAATTAGTCAAATACGATctcaaaataagcaacaacatcaacaacatcaacaacagcaacaacagcagcaacatcatGCAAATGCTCCTTCATTAGCGacgcaacaccaacaacagtcTCAACCACAAGgcataaatttcagcattcagcaTCCGCAGCTGCGCATGAGTGCAGCCAATGTAGCGCAAGCACATTTGTCTCAGCACGCCGTTGCATCGGCAGACGGACATCAGGGTTCCGCTCAGCTACGCCATCATGCGCCACCGGCTGGTAAATATTTCAGCCAACAAGTAGTTCATGCAACGGAGCAATTAGTGCATCAACAGCAGCCAgagcaacaccaacaccaacaccaacccCAACACAACACACACCACACGCAGCACACACAAAAGCAGCAGCCAGTACAACAGGGGTACAGCGCTGATTATCAGCAAGTGCAGCCACACCATGCGCAGCCAGCGGTAAGTGCCAGTCATCATACTCAGCATAAAACCTTCTCGCTTTCGCGTCAAAACCTCGCCGCAATGAACTTGCAACAAGCAGCACAGCCAGCGAATCTAACACCATCACCGTCAGCTTCGGTGCTGCGATATGCCGAATCACCAGTGGCGCATTACCTGGAACGTGAGAATGGCGACTTCATTGTGCAGGAAACTCCCAAGCACATTGTCGAATGTGTGGAAAAGGATAATGGTGAATTCTCTGTGATCGAGCGCATCTATCATTCGCCACCAAGTGTCTTGCACATACACGAGGAGGAAGTGGAAGACGATGATGAAATGCATGAACATAAAACAGCTGCAGTCTCTGAGCAAGACCGTAAGGCAATGGATTTGCACGAAAAAGTGTCGTCCAGTGCATCAAAGGCGACCACGGACGAGGATGAATTCATGAGCGGCCCGGATAGTGACAACGACTACAGTAGCAGTGTGAGCGCTAGCGGGAGCGTTGCTCATAAAAGACATAAAAAGCAACGCAAAAATTCAGCAACTAACAAACTGCGAGATCAGCACTTAGTGGACAAAGAGACAGCACTCAATATGGAGCCCACCACTAGTGCAGCAGCAATGTCCAACAGCATGCAGGTCGAAGGCGATGGCAGCGCAACTAAATTGTCAGTGGACAACAGCGGAAACGCATCGGTTAGCAACAACACACGCAAGCGTACTTCAAAAAACACCGTTACTGTGCTTAGCGATGTGCAGTTGAACCTGAACGAGTACTTGGATCTTGTGGGCAACATAATCGCATCCAGCAAGTCACAGCGCTCGCGTTTGTCGGCACTTACGCCCATGGCGCtcgtgaaaattgaaaaagaggAGCCAATGGATGAATACGACGAAGAGCAGCCGCAAAAGAACGAAGACGCTACAACATGTGTAGCGCAGCATGCAGATAATGCATCGGCTATCAATGGCAGCAACGTAGagactgaaaatttaattactaaaaacgATGAGTCCAGCAGCggcgaaataaaaatacaaacagacGCGGCAGCAGAAGACAGTGACTGCAAAGCAACTGCGAGCAACCACACTGAATACCATGGTTTCAATGCCAAGCTAACAACAGCAGCGAGCAATTCCAGTCATTTCACGACCAGTGTCATACGTATGGCCAGTGCCACAgcccaacagcagcagcagcagccaacagcaacaacaactacaacagagCAGCGTGTCGATGAACAAGTAGGCGCCACAGCTCAGCCTCGTGATAGCAATATGGCAGAAGATTTATCACAGCCGCAGCTAAAGTCTGAAATCGAAACACATCCCACACAgctcacaacaacaaaaataccaaaagctTCTATGATACGCGGCGGCAAGATAACGAACCACAACAACACTCAAGCTGCATCCATTGCTAGCAGTAATATATTGCCACCAAAAAAGGGTCCAAAGAAACTAGTAATCAAACCAAAATCGACAGCTAAGACTGATACAAATGCCAAAcagcgagAAACTGAGGCAACGCATGCACCACCGCTCAATAATGTAGTGATTAAAAATGAGCCAATGCATTCGGTGGGCTATGAGCCAGCGGCGGCGACTACTACAACATCTCCAGCAGCGAGCATACTcgagcagcaattaaaatatggCACAGCGAGTGCAGCGGCACAGGCAGCACCAGGCAATACCGCCATCGAGTGCATAGACGAGAAACCACAAATTCAAGAGATGACATTGCATCTGCATAAAAATGTCGCCGATGCTGAAGTCTTGTTACAGCTGGCAAATGGCAAACATAAACAGCCAACAGTTGGAACGACCGACAATTCTAGCAATTCCAACTACACGCATGCCTCCCTGGACGATGATACCGATTGCAGTAGCACCGATACACCCAAAAAGGTTGTTGCCAGCGCACGCTATGCTCTGCCAACAACGACATCGCCTACAGCCGATGATGCAAGCATAAGTTTGCAAAGCAATGCGCCCGGGGCTAACACAGTTGGTGAGCTGAGCGAAGAGGGGCAAGGCATTATAATATCATCGTCGTCATATACGCTGCAGCCCAATGATAATGAACATTCCAACAGCAATGTCGTCGAGGCCACTAGCAGCAGCGCCAGTAAGTCAATGTCCGCAAGCGTTGCTATTGCTGCGGAAACAAtccaaaagcagcaacaatcaTCAAACACGCCATCACAAATGCCCCACAACTTTTCCGAGTATCCGTTTACGTTTCTCTACAATCAACAGCACGGCGGCGATgcaagcaatagcaacagcaacagcaacagcctaCCACACGTGACCAACTTTCACTACCAGCATGCAAATGATGCGACCAACGCAGCCACATTAGCCACATCATCGGCATTGTCAACTTCATCGGTTAGCAATTCCGCCGAAAACCTTGACGATTCTACGTCCATGCCCATGCCCGCAAACACCGCAATGCACACACATTTCAGCAAAACGTCGCATGTAAATGCCGCAACAACGCACACGTGgtaccagcaacagcaacagcatcagcagGCGACCAATCATCATCAGCATGCGCATGGGCACGCGCATGgacaacaccagcagcaacaacaacatgattTTAATGCTTTGGCTGTTGATTGTTCGGCTGCTGTGGATAGCGGCGATATGGTCGGCCGCTACTTGGACTTGGATGCTTGCAGACATGAGATTGTGGTCGGTAgtagcaataacagcaacaccaCAACGAACACTACCAACACCAACATACATGCGCATGCCACCTCAACGTCATCCTCATTTACGGCCGCTGGTGGTGACAGCAGTTTGGCTGGCTGCTGCACTACAGACGCTTTGAATATACGCACCGATGAGAAGATGCCAGCCAAAGGCGAAATCTCCGAACAGGAAAGCAACTGCGACATTGAAAACTCATGGAGTCAGCCAATGTATGGCGACTTGTCGGCGCGTTTCTTCCGCACCACATTTCCGGGCATTTTCCCACATGACAATGGCTGCTGGGCACAGGATGATTATTTCGATGTACAGGATTTGAGCACATCAACCCTGGCCGATGGCAATAATCGTGCTAATAAAAGCTTCGATTTTGGTCTAGCGCAGGAAGCCACTACCTCGGCAAATGCAATGGGACAGGTCAATCGGAATATGCAATTGTTCTCACAACATGCAGAACTTTTAATGCCATCGACATCGACGGCGGCTACAagcgcaacaaataaaaagaaacgaaaacGTGACAGTGGTGCGCATACACAGCCTACATCGACTATAACATCGCAGCAGTTgttattgcaacaacagcagcagcaacacatgcAAATGCAGGCACTACAATTCCAACATCCCACCTCATCCGCGTTAACCTCATCGTCGGCACTAATGGCTGGTCCATTAAACACTTCAAACGTGCATATGCCGTCAACTGCTGCACAAGCGAAGGCACGCAAAAAAGTCTATCAATGTCCACATTGTGCTTTGATCTTCACCAAGCTGAAGGATCGCAACACTCACTTGATAGTGGCACACAATTATGTTCGCCAAAATCGTCGCTTAATTTGCACAGAACAAGCGTCAGCTGCTTTGGAGCCGCACAGCTCGGCAGCTTTAGCAATGCCGTTAATAACTGCGCAGCAGCCACAAATTGAGGACTCCAAAGAGGGcattgtcaaaattaaaatggaacaaAGTGtggaacaacaacaacaagagtcCACGGAAACGCCTGATGCGGAGTGCAGTGATCTGCATGCTGCTGGCTTAGTGACGACAAAAGCTGAACCGCTGCCAGATGATAAGGCGCTGGTACCGTATGACGCTAGTGCGGCTACTGCAATGGAAACCGATGCCTACGATGCCAAGCCCAATATCAAAACATTAGCTATCACGACGCCAGCTACAAAATTAGCTGCCATATACCGCATGCTCATCTCATTTAATGCGTCGGTCTTGAAGCAGAATCAGACGCTCAACGACTTCGACGAGAAGGTAATTGAATCGTCGATATTCTTCTGCTATGTGTGTCGTACGAACTTCAGCTCGGTAAAGCTGTACGATGCACATTTGACGGAGCACGCTGCTGAGTGCTTTACATGTGGCAAGAAGTTTCAGCGCTGGAAGAATTTCTCGCTGCATTTGAAGCGGCACATGGGCTGGAAGGAATTTGGCTGCAATGTGTGCGATAAAAAATTTGTCGTTCGAAATGCACTGGTTGAACATTTGCGCACGCATACCGGACAAACGCCGCTCAAGTGTAAAATTTGCGGTAAACACTTTAAGCGCTATTCAAACTTGACGCAGCACCGCAAGCGGCACACCAAGCAAGTGGTGCGCAAAAAGGAGTACGTCTGTCATTGCGGTGAGGTGTTGCCATCGAAGGCGCGTTATCGTTGGCATAAGGAGACGCATGACTCCAAACCGAAATGCTGTCCACATTGCTGTGATCGTTTCGTGCACATGAACTCGCTGCGACGACACATTCGCTTGGCGCACTCGGATAAATTCGACTACGCCGAGCCCATGGAATGCCCCATGTGCAAGCAGGTCTTTGCAAAGACATCCATAAAGGCACACATGGCCACACACTCCATGGATGCACAGTTCAGTTGCgccatttgcaataaaactttctCGACGAAATGGAACTTAAAGATACACTCGTGGGTGCATGCCAATCGCACTGCCAAACCCTTCAAATGCGAGCACTGCCCCAAGGCATTTGTACGTGAGCTGgactttaaaaatcatatgaatgcACACAAGCAAATTAAACCATATACATGCGAGTATTGTGGTTGTAAATTCATACGAAAATACAATTACATGCGACATCGCCGCGAACATCACGGCAAGAAGAAATTCACATGCGACTGCTGTGATAAATCGTTTCACCGGCACTACTATTTGATCGAACACCGACGCATACACACCGGCGAACGTCCATTCCAATGCACAATATGCGGCAAGAGCTCAACAACGAAAACAAATCACAACAAACATCTGAAAATACATNNNNNCAACAAACATCTGAAAATACATCATTCGCGTGATCCGTTTACTGTCGAGGCCTAA
- Protein Sequence
- MAENVQCPVCTLYLHAGMSLSDHLETHPKEQVIKALVQMTISGASGAATSALASALVAESKPKVEEKALPDKEEESNSASCASSVQSSTTISSNKTASTLATTLSYAADDNSVNTLSTLSSGVTNPPVAVNASTSNTNSNQSHHSQQQPPSHIGSNSASYQRFGNENVSKKPNTSSAAVPIAPTTAASVTATGAVVSKTNENAILPRDFSNRNFSNVNLYHQQLTQQQPQHMQHANVTTLPPPPPLQLFTYHNSQQQAQHTHHQLPQQHQRPPPAYGAAISQIRSQNKQQHQQHQQQQQQQQHHANAPSLATQHQQQSQPQGINFSIQHPQLRMSAANVAQAHLSQHAVASADGHQGSAQLRHHAPPAGKYFSQQVVHATEQLVHQQQPEQHQHQHQPQHNTHHTQHTQKQQPVQQGYSADYQQVQPHHAQPAVSASHHTQHKTFSLSRQNLAAMNLQQAAQPANLTPSPSASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKDNGEFSVIERIYHSPPSVLHIHEEEVEDDDEMHEHKTAAVSEQDRKAMDLHEKVSSSASKATTDEDEFMSGPDSDNDYSSSVSASGSVAHKRHKKQRKNSATNKLRDQHLVDKETALNMEPTTSAAAMSNSMQVEGDGSATKLSVDNSGNASVSNNTRKRTSKNTVTVLSDVQLNLNEYLDLVGNIIASSKSQRSRLSALTPMALVKIEKEEPMDEYDEEQPQKNEDATTCVAQHADNASAINGSNVETENLITKNDESSSGEIKIQTDAAAEDSDCKATASNHTEYHGFNAKLTTAASNSSHFTTSVIRMASATAQQQQQQPTATTTTTEQRVDEQVGATAQPRDSNMAEDLSQPQLKSEIETHPTQLTTTKIPKASMIRGGKITNHNNTQAASIASSNILPPKKGPKKLVIKPKSTAKTDTNAKQRETEATHAPPLNNVVIKNEPMHSVGYEPAAATTTTSPAASILEQQLKYGTASAAAQAAPGNTAIECIDEKPQIQEMTLHLHKNVADAEVLLQLANGKHKQPTVGTTDNSSNSNYTHASLDDDTDCSSTDTPKKVVASARYALPTTTSPTADDASISLQSNAPGANTVGELSEEGQGIIISSSSYTLQPNDNEHSNSNVVEATSSSASKSMSASVAIAAETIQKQQQSSNTPSQMPHNFSEYPFTFLYNQQHGGDASNSNSNSNSLPHVTNFHYQHANDATNAATLATSSALSTSSVSNSAENLDDSTSMPMPANTAMHTHFSKTSHVNAATTHTWYQQQQQHQQATNHHQHAHGHAHGQHQQQQQHDFNALAVDCSAAVDSGDMVGRYLDLDACRHEIVVGSSNNSNTTTNTTNTNIHAHATSTSSSFTAAGGDSSLAGCCTTDALNIRTDEKMPAKGEISEQESNCDIENSWSQPMYGDLSARFFRTTFPGIFPHDNGCWAQDDYFDVQDLSTSTLADGNNRANKSFDFGLAQEATTSANAMGQVNRNMQLFSQHAELLMPSTSTAATSATNKKKRKRDSGAHTQPTSTITSQQLLLQQQQQQHMQMQALQFQHPTSSALTSSSALMAGPLNTSNVHMPSTAAQAKARKKVYQCPHCALIFTKLKDRNTHLIVAHNYVRQNRRLICTEQASAALEPHSSAALAMPLITAQQPQIEDSKEGIVKIKMEQSVEQQQQESTETPDAECSDLHAAGLVTTKAEPLPDDKALVPYDASAATAMETDAYDAKPNIKTLAITTPATKLAAIYRMLISFNASVLKQNQTLNDFDEKVIESSIFFCYVCRTNFSSVKLYDAHLTEHAAECFTCGKKFQRWKNFSLHLKRHMGWKEFGCNVCDKKFVVRNALVEHLRTHTGQTPLKCKICGKHFKRYSNLTQHRKRHTKQVVRKKEYVCHCGEVLPSKARYRWHKETHDSKPKCCPHCCDRFVHMNSLRRHIRLAHSDKFDYAEPMECPMCKQVFAKTSIKAHMATHSMDAQFSCAICNKTFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGKKKFTCDCCDKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHXXNKHLKIHHSRDPFTVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -