Basic Information

Insect: Ephydra gracilis
Gene Symbol: -
Assembly: GCA_001014675.1
Location: JXPQ01001715.1:8581-12033[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.099 9.3 7.1 3.3 1 23 31 53 31 53 0.94

2 9 4.2e-05 0.004 17.7 0.4 1 23 210 232 210 232 0.97

3 9 5.7e-06 0.00054 20.5 1.4 1 23 238 260 238 260 0.99

4 9 6.7e-06 0.00064 20.2 4.1 1 23 266 288 266 288 0.98

5 9 5.7e-06 0.00053 20.5 1.7 1 23 294 316 294 316 0.97

6 9 3e-05 0.0028 18.2 4.0 1 23 322 344 322 344 0.95

7 9 0.0001 0.0096 16.5 1.6 1 23 350 372 350 372 0.97

8 9 0.00087 0.081 13.6 3.4 1 22 378 399 378 402 0.91

9 9 1.9 1.8e+02 3.1 1.6 3 23 400 420 399 420 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.099	9.3	7.1	3.3	1	23	31	53	31	53	0.94
2	9	4.2e-05	0.004	17.7	0.4	1	23	210	232	210	232	0.97
3	9	5.7e-06	0.00054	20.5	1.4	1	23	238	260	238	260	0.99
4	9	6.7e-06	0.00064	20.2	4.1	1	23	266	288	266	288	0.98
5	9	5.7e-06	0.00053	20.5	1.7	1	23	294	316	294	316	0.97
6	9	3e-05	0.0028	18.2	4.0	1	23	322	344	322	344	0.95
7	9	0.0001	0.0096	16.5	1.6	1	23	350	372	350	372	0.97
8	9	0.00087	0.081	13.6	3.4	1	22	378	399	378	402	0.91
9	9	1.9	1.8e+02	3.1	1.6	3	23	400	420	399	420	0.91

Sequence Information

Coding Sequence: atgaataaatcTTGCCCACGTAATGCAACGCGACAGGAGGCCATTATTTGTGGCGAAATAGTGTTCAATAAGAATTCTTGGCACATACTTTATCAATGTAGTTATTGCCAAAGAAAGCTACAACATTTGGATTTGTTTCTAAAGCATTCGCTCGAGCACATATTTGAGAAATGTGCGGATAATGAGATAAGTAAGAAAATCGCTAGATTTTTAGCAACAATAAGCGCCAGTATACGGCAGTCCGATGAAGTATTAAACACCGATGATATTGAATGGGCCGTCTGCAACGCAGATCCCAATGTAATCATCAAAGCAGAAGAGATTAATAATATTGACACATACGTCGATAGCACGCAGCTGAAAGCAGCAGACGAATATGAGATTTTCATACCCACCGACCAAGCAGCAGTTGCAATGGAAGAGGTATTTATTGGCGATAATACAGCTGGTCAGCAATCTAGCGAGACCGCCACAAACAATACGCAGGCTTTGCGCAATACGCATGGACAGCCGCAAAAAGCGGACTGCCTGCATAATTCCACAGCAGatagattaacaaaaaaatatctagctgacaaaataaatgcgaaatcaGCAGAAAATACGCTAGCCAAGCAAACTGCTGAATTTGTGTGTCCAGTTTGTGGCAAGCAATTTGGCGTAAAGaagtattataaaaatcatGTAATACGTCACAGCGCTGATAGGCCATATAAATGTGATATTTGCGATGCTGGCTTTAACGATCGCGGCAATTTATGCGAGCATCGTAAACGCCATCTCGGCGTGCAGCCGCATAAGTGCGAACAATGTGAGAAACGATTCACAACAACTACCGAATTGAGAGTCCATCAGCGATCCCATACAGGTGAGAAACCTTTCGTCTGTGAGAAATGTGGCGCCTCATACTCGACCAGTTCACACTTAAATCAGCACAGCTTGCGCCACTCAAATATACGTGCACACGTTTGCAACGAGTGTGGCAAGcaattttacagcaaaaaacATCTCAAAGAACACACTGTGATACATAGCGAGCTAAGGCCATATAAATGTGATATTTGTGCGATGACATTCAAATCGACTAGCACACTGCGAAAccacaacaaattgcatttgaatctATTCGAATATAAGTGCCCATATTGCCATAAGCAATTCCAACAAAACGCCGGCATGTACTCACACATTAAGAACTGCGggcattgccaaaaaaatatacaaaatttggaaCACTTTTTATGGCATTCACTTGGACACTTGTACGGCATAAACGACGGCGATGAGAAGAATcacaaattggcaaagtatttgACAGCAAACGCATTAGAAAAGGATTCCGAAACGATACTCCATGTAATTGGCTCAGAGTGTAAGCTACCGTCTGCCGAtccattggaaaatattaagacagaggaaattaatataataaatgagtgtgATAATGACAAACAGCTTGCTATCTTAGAGACGAATTCACCGATTAACAAACTAAATGATGAGCATGTTGCGGCTGTGGCTCCTAGccaaaatttggttaatatcgTAACTCCTGGTGATATCGAAATCCCAAAGAATGTCGCACACGATAAGATTATTGGGAGAGCTGATGATTCGTTCTGCACAATAACTAGTTTTCAAACAGAATTTGTCGATTTAGGCAAAACCAACACAAATGTTGCAGCAGATACCatcaaaaagaagcaaaaagttTCAAAGCAAACGAAAGAACGTCANCAGtttcaaagcaaaagaaagaaCGTCATTTCATTTGTCCCATTTGTGACAaagaattttacataa
Protein Sequence: MNKSCPRNATRQEAIICGEIVFNKNSWHILYQCSYCQRKLQHLDLFLKHSLEHIFEKCADNEISKKIARFLATISASIRQSDEVLNTDDIEWAVCNADPNVIIKAEEINNIDTYVDSTQLKAADEYEIFIPTDQAAVAMEEVFIGDNTAGQQSSETATNNTQALRNTHGQPQKADCLHNSTADRLTKKYLADKINAKSAENTLAKQTAEFVCPVCGKQFGVKKYYKNHVIRHSADRPYKCDICDAGFNDRGNLCEHRKRHLGVQPHKCEQCEKRFTTTTELRVHQRSHTGEKPFVCEKCGASYSTSSHLNQHSLRHSNIRAHVCNECGKQFYSKKHLKEHTVIHSELRPYKCDICAMTFKSTSTLRNHNKLHLNLFEYKCPYCHKQFQQNAGMYSHIKNCGHCQKNIQNLEHFLWHSLGHLYGINDGDEKNHKLAKYLTANALEKDSETILHVIGSECKLPSADPLENIKTEEINIINECDNDKQLAILETNSPINKLNDEHVAAVAPSQNLVNIVTPGDIEIPKNVAHDKIIGRADDSFCTITSFQTEFVDLGKTNTNVAADTIKKKQKVSKQTKERXQFQSKRKNVISFVPFVTKNFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -