Egra012226.1
Basic Information
- Insect
- Ephydra gracilis
- Gene Symbol
- wek
- Assembly
- GCA_001014675.1
- Location
- JXPQ01008619.1:24852-27271[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00035 0.033 14.9 2.6 1 23 278 301 278 301 0.96 2 9 1.6e-05 0.0015 19.0 1.5 1 23 409 432 409 432 0.95 3 9 7.1e-05 0.0067 17.0 1.2 2 23 442 463 441 463 0.96 4 9 9.6e-05 0.009 16.6 0.2 1 23 472 495 472 495 0.93 5 9 0.00026 0.025 15.2 0.0 1 23 501 523 501 523 0.97 6 9 1.2e-05 0.0012 19.4 0.2 2 23 530 551 529 551 0.97 7 9 2.8e-05 0.0027 18.3 1.9 1 23 556 578 556 578 0.98 8 9 7e-05 0.0066 17.1 0.7 1 23 584 606 584 606 0.97 9 9 0.0036 0.34 11.7 4.8 1 23 612 635 612 635 0.97
Sequence Information
- Coding Sequence
- ATGTCTGCAGAAACTACCAATGCTAACGTCGACTGGCATAAGTGGTGCCGACTTTGTGCTAGGTGTGATGCAGCAGGCAACATAAGTGTGTTTCAAACGAATGAGGACAAAATGTTTGATGCTACCTTGGCAGCGGCTATAGGTAAATATTTTTGGGTGAATATTAAAATTGATGATGCGTTGTCGAGGGACCTGTGCCAAGATTGCCACAAACTGATGACCGAATTGATCAAATTCGCTGAGCGTGTTAACAAAGTTCAAGCAATGTACTGTGTACTACAAAACATAGGCACCAATGCCTCTGTGAATCCTAATGATGTAAGAAAGCAATACGGTTTACTAGAGGAGGATTTTGAgcatataattaaaagcaaaactacCCCCAATACTGAGCATACAGACGCAGAACCAGTTGCTGAATTAAAGTCGATGCATAAAAACTCTTCTGAGGAGGAACATGTGGAAGTCGACGTCGAACAGattgttgaatttgattcagTGGAATATGTTGAGGAAGAGCAAGCAGTTAAATGTGAGCCCAATGACAACGAGTCGACTCagcatttagaaaattcaaaagacaaaaatttgacagaaaattcaaaagttgcTTTGTCGACAAATAAATCACCACAAAAACAGCGctacataataaaaaagaagccGAAATCAACAAGCGTAGAAGCTGTCAATGAAAGCGAATTGGATAGCGATGAAAAAgaattggaatttgaatttatgcccGATATGGACAATGAAGACGAAATTGATGTGAAAACGTTGAACACACCTACGGTTACCTCAGTGGTGTCTAAGGAAACAGAAGTCAATTACAAATGCGATTTatgttttaaagtttataaaagtGCAGCTTGCTTTCGGAAGCACATTTTGCAAGGGCATAATAAAAGTAGTCCAAAAGTAATGGCACCCAAAGATGTAGAGACGTCTAAAGATCACACAGAATTTGAAGTAGAATTCGTTAGCGATGGTGAAGCCTTCGACGATGAAGACGGAATAACTGATACCGATATACAGCATTCAAATAGTGAAAATAAGGACGATGAAGAGTTCCACAACGACACACAATCTGATGCAGCTGCAGAGAGCAGTAGCAAGCAGACAAGAAAACGCCGCCACAGAAGAAGTTCCTTAACAGATCATTTCATTAAGGTAGCCAAAAGAAGCGAAGGTGAAGACAGTAGCAGCGCTAGTGGGCCACGGTATCAGTGTGAAATATGTAACAAGCCATACAAAAGCCCAAATTGTTATCGCAAACATATGATTGAAGCGCACAATAAGGAGGCCAATATCATTGATCTGCCATGCGACAAATGTGACCAGACATTTTTCACAGAAAAACAATTGGCCAATCATAAGCGTAGGCACTTGCCGGCATCTGAAAAATTGGACTATGAATGCTCGTATTGTGAGAGGAAGTTTACTACAATTGGAGCTTTACGCCAGCATGTCagtggcatacattttgatgaGAAACCATTTATATGCGATGAATGCGGCAAACCGCTAAGGACTTTGGCTGCGCTAAACGAACACAAATTAGTGCATACAGATGACACGCCAGTTGAGTGTGAAGTTTGTGGCAAGGGCTTCAAAAATAAGGCACGCATGAAGGTGCATATGGACACACATGCATCCACGGAGTATACTTGCAACATTTGCGGTCTCTGCTTGAATACGAGGCGCACGCTGAAGATGCACATGCTTGTGCATACAGACGAAAAGCAATACAAGTGCACATTCTGCCCTGCGGCATTTAAACGCACTAAAGCGCTCAAAAATCACTTGATACTGCATACGGGTCTACGTCCGTATGTGTgtaatttttgcaagaaaacaTTCTCCAATGGCTCGAATTGTCGAGCGCATAAGAAAAAAGTACATCCGGTAGAGCTAGCCAAAGAAGAGCAGGAAGGTAAACCGGCTGAGCGCACATCTGTACCGAATTTGAATGAGCTAAGAGCCAGTTCCAAGGTAGCAAATCCACGAAAGGTTACGCGCAGCGGTGGGCTATCACAGCGTATGCGTGCTTTAATTATTGCAGCGGAGCAACGTGAAATGATGCAAAATATTGGCAAAGACGAGAACGACACCATGGATACGATGCAGTCATTTGTTGTCGAAGAAGAAGATTTGTCCAATTTAATATCCGACTCACAAAACGAGGAGGATGACGTTAGCGAAACAATTATTTATGAGGTCATCGAAACAATATAA
- Protein Sequence
- MSAETTNANVDWHKWCRLCARCDAAGNISVFQTNEDKMFDATLAAAIGKYFWVNIKIDDALSRDLCQDCHKLMTELIKFAERVNKVQAMYCVLQNIGTNASVNPNDVRKQYGLLEEDFEHIIKSKTTPNTEHTDAEPVAELKSMHKNSSEEEHVEVDVEQIVEFDSVEYVEEEQAVKCEPNDNESTQHLENSKDKNLTENSKVALSTNKSPQKQRYIIKKKPKSTSVEAVNESELDSDEKELEFEFMPDMDNEDEIDVKTLNTPTVTSVVSKETEVNYKCDLCFKVYKSAACFRKHILQGHNKSSPKVMAPKDVETSKDHTEFEVEFVSDGEAFDDEDGITDTDIQHSNSENKDDEEFHNDTQSDAAAESSSKQTRKRRHRRSSLTDHFIKVAKRSEGEDSSSASGPRYQCEICNKPYKSPNCYRKHMIEAHNKEANIIDLPCDKCDQTFFTEKQLANHKRRHLPASEKLDYECSYCERKFTTIGALRQHVSGIHFDEKPFICDECGKPLRTLAALNEHKLVHTDDTPVECEVCGKGFKNKARMKVHMDTHASTEYTCNICGLCLNTRRTLKMHMLVHTDEKQYKCTFCPAAFKRTKALKNHLILHTGLRPYVCNFCKKTFSNGSNCRAHKKKVHPVELAKEEQEGKPAERTSVPNLNELRASSKVANPRKVTRSGGLSQRMRALIIAAEQREMMQNIGKDENDTMDTMQSFVVEEEDLSNLISDSQNEEDDVSETIIYEVIETI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -