Egra010572.1
Basic Information
- Insect
- Ephydra gracilis
- Gene Symbol
- znf711
- Assembly
- GCA_001014675.1
- Location
- JXPQ01015387.1:8496-10764[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.5e-05 0.0014 19.2 0.2 3 23 4 24 3 24 0.96 2 15 2e-06 0.00019 21.9 2.4 1 23 30 53 30 53 0.97 3 15 2e-05 0.0019 18.8 6.6 1 23 59 82 59 82 0.98 4 15 0.00074 0.069 13.8 5.3 1 23 94 117 94 117 0.94 5 15 1.1e-06 0.00011 22.7 1.7 1 23 225 247 225 247 0.98 6 15 0.0002 0.019 15.6 5.7 1 23 253 275 253 275 0.99 7 15 0.12 11 6.9 0.2 1 23 288 310 288 310 0.94 8 15 0.03 2.9 8.7 1.9 1 20 318 337 318 338 0.95 9 15 9e-05 0.0085 16.7 1.5 1 23 391 413 391 413 0.98 10 15 0.024 2.2 9.1 1.2 1 23 419 443 419 443 0.89 11 15 0.56 53 4.8 7.4 1 23 449 471 449 471 0.99 12 15 1.8e-06 0.00017 22.1 5.0 1 23 542 564 542 564 0.98 13 15 1.4e-06 0.00013 22.4 3.7 1 23 570 592 570 592 0.98 14 15 9e-07 8.4e-05 23.0 0.4 1 23 599 621 599 621 0.98 15 15 0.00028 0.026 15.2 1.5 1 21 627 647 627 648 0.95
Sequence Information
- Coding Sequence
- ATGTTGCTCTGCGAAACTTGCGGTCGCGCATTCAAGAAACCTTCTTTACTGCGAAGACACGAAGCTGTGCATAGAAATGAGAAACTTTATAAGTGTCTTGAATGTAAACAAGAATTCACACAAAACTCATCACTACAACGtcatattaagcaaaaacatCGGCGCGAAAGACAATATAAATGCCCCCATTGCCCACAGTCTTTTGCACAACATTGCAATctgaaattgcatataaaacgTACTCATAGCTTAGACAATGAAAGATACGATAATCATTACTTTCCATGCAATTTGTGTGAATGTGTATTCCAACGGAATAGCTCTCTAAAACGTCATCAAACTTTATGCCATAAACTAGATGGCAATAAAGCAGCAGACGCCTCTGTACTCGCAGCAACAGACGACCCAGATATTCTGGCAAAAAATGTACTTGCACAGCTGAAGCATCTGCAGCAAGATTTAGATTTGAAGTATCAATGCGAAGTCGATGCTAATGAAGAGCTTCGCATCACTGAGGAACTAAATAATAGCACTGCTGTAGCAACTGTGCCAGAAGCATTTTTAGACAATGTCGCTGCGCAAACGGTTACCTTAAAGGATCGTTTGAATcctcaaaaacaaacaaatttgtttagtGTACTCACTGTGCAACGCCCTAATGTACCCAAATGCTACGTTTGTGAATTTTGTAAGAAGGAATTCAGCAAGTCGTATGATCTAATCAGGCATCGTCGTGTGCACACTAAAGAGCGTCCTTATCAATGCGCTATCTGTTCACAATGTTTTCCAACGCAGCACAAATTGAATCTGCACAAACGTAAGCATATTTTGGATGAAAAAACTGGACTGTTTGCCAAGCAATACAACTGCATTGAATGTGAGCTAAAGTTTGACTCTATAAAGAAATTGGATGCGCATATGCTgAGCCACTACCCTGAAGGTCAAAGAGTCTACAGCTGCAATCGATGTGCggcaacattttcaacaaaaaaatcatttcttgcACACAAACACTGCGTCGATTTGGatctaaaaaaattggaaaagttaATGCCAGAGCCAATATACCTAGGCGATACTACGCCTGTCGAAATTAGTACACCACAAAATGCTTGTAATTGCCAGAAATGCCGCCACGAGCCGCTAAACCAGAATgatacacacaaatttttcaaatgcgatGACTGCGGCAAGTATTACTGCACAATCTCTGCTTTGAATGGACATAAGCAAGTCCACATAGACTATAAAAGTTTCAGTTGTCCGCTGTGCCCGAAGAAGTACTTTCTTACGAAATCCCAGCTAGAACAACATCAGCAATATATGCACAACGAACAGCGGAAATACAAATGTGCCTACTGTGCTGCGCTTTTCAAAACGCATGCTCATTGCAAAAGTCATATGAAAACGCATATCAAGCATCTGCTGAATGGCACCAAAGACTTGGCCACATTTACGGACACTCAAAgtgaaattattgaagaaaatgtaGCGCAGCCTAAGGtaaaacccaaatttatttctttggaaCTAGCTGCTGTAGCAGGCAAGTCCATGCATCACAATATAACCATTGAACCGTTGAAGCCCTCAATCGCAGTTGCAAGCGTTATCGGTGCAAAACACAAGTGCACTTTTtgtgaaaaaacttttaaaaaaccCAGTGACTTGTTGCGTCATACGCGCACCCATACAAAAGAGCGCCCGTTTGAGTGCAAGCAATGTGGCAAATGCTTTACACTGAAATCCACGCTTATGGAACACCAGCTAACACATAGCTCGGAACGTACTTCATATACGTGTCAAGTGTGTGGAAAGGCATATGCCTCGAAGAAAACCCTACAAATACACCTGCGACTGCACACCAATACGCGGCCATTTGAATGCGAACATTGCGGACAGAGATTTCGTACATCTGGCCATCGTCTGTCACACTTGAAGGCACAAAATAGCTGCCGTGTTAAAAGGCATGCACAGTAA
- Protein Sequence
- MLLCETCGRAFKKPSLLRRHEAVHRNEKLYKCLECKQEFTQNSSLQRHIKQKHRRERQYKCPHCPQSFAQHCNLKLHIKRTHSLDNERYDNHYFPCNLCECVFQRNSSLKRHQTLCHKLDGNKAADASVLAATDDPDILAKNVLAQLKHLQQDLDLKYQCEVDANEELRITEELNNSTAVATVPEAFLDNVAAQTVTLKDRLNPQKQTNLFSVLTVQRPNVPKCYVCEFCKKEFSKSYDLIRHRRVHTKERPYQCAICSQCFPTQHKLNLHKRKHILDEKTGLFAKQYNCIECELKFDSIKKLDAHMLSHYPEGQRVYSCNRCAATFSTKKSFLAHKHCVDLDLKKLEKLMPEPIYLGDTTPVEISTPQNACNCQKCRHEPLNQNDTHKFFKCDDCGKYYCTISALNGHKQVHIDYKSFSCPLCPKKYFLTKSQLEQHQQYMHNEQRKYKCAYCAALFKTHAHCKSHMKTHIKHLLNGTKDLATFTDTQSEIIEENVAQPKVKPKFISLELAAVAGKSMHHNITIEPLKPSIAVASVIGAKHKCTFCEKTFKKPSDLLRHTRTHTKERPFECKQCGKCFTLKSTLMEHQLTHSSERTSYTCQVCGKAYASKKTLQIHLRLHTNTRPFECEHCGQRFRTSGHRLSHLKAQNSCRVKRHAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -