Egra000528.1
Basic Information
- Insect
- Ephydra gracilis
- Gene Symbol
- -
- Assembly
- GCA_001014675.1
- Location
- JXPQ01012139.1:13543-16237[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00037 0.034 14.8 0.8 1 21 115 135 115 138 0.94 2 13 0.78 74 4.3 0.3 2 23 149 170 148 170 0.87 3 13 0.0025 0.23 12.2 3.9 1 23 179 202 179 202 0.97 4 13 1.4e-05 0.0013 19.2 4.1 2 23 250 272 249 272 0.91 5 13 2.4e-05 0.0023 18.5 5.5 2 23 459 480 459 480 0.97 6 13 2.3e-06 0.00022 21.7 4.2 1 23 486 509 486 509 0.95 7 13 0.00012 0.012 16.3 0.5 1 23 514 537 514 537 0.96 8 13 0.00021 0.019 15.6 2.6 1 23 549 571 549 571 0.92 9 13 0.00046 0.043 14.5 2.0 1 23 576 598 576 598 0.97 10 13 4.3e-06 0.0004 20.9 0.2 1 23 605 627 605 627 0.96 11 13 2e-06 0.00019 21.9 1.0 1 23 633 655 633 655 0.98 12 13 9.1e-07 8.6e-05 23.0 1.7 3 23 663 683 662 683 0.99 13 13 1.8e-08 1.7e-06 28.3 1.1 1 23 689 711 689 711 0.99
Sequence Information
- Coding Sequence
- ATGTCCTTTGACGGCAAAGTGGATAGTGAAAAGGTGTGTCGCATATGTCTGCAGGAGCATCTAgaattgtatttgatttttgatgaaACCTACGCAACGGACGACACACCAACCATCGCAGAAGTTATATCTGAAATTACCAGATATCAAGTGGAACGTTTCGATGATTTACCACATCAagtttgttttgattgcatgaGATGGGCACAGAATGCCTATCGCTTTCGCCGAGCGGCTGAACAGGCATATCGCCAACTAATTCAACAGATAGGCGTCCAAAAGGAGTGCAAAATCAAAGCCAACTACAATGATGTTGAAGTACAAACAGATGCCTCATTATTCTATGTGTGTGAAATATGCAATCGAAATTTTACAACAATAGTGCAGCTGCAAGAGCACCGCATGTGCGCCCACGGCCATATGAATGGCAGGAAGGGTAAGAAGAAATGTAATGTATGCGGTGTCTACATGAGATTGCGACAGCTCGAGAAACATATATTACAAGCGCATCCTAGTTGCACAAATGCCTTAAACTATAGTTGCAAATTTTGcgtcaaaaaatttcatttgaaaagcgCTTTTAAAAGGCATCTGAATATAGCGCATCAGCTCAGCAAGGAAGAGGCTGCTAAAACGTTAGCAGACATGCTGTGCGAagataaaaatactgaaaatagcGAGGATGTGGATAGCCTGGAATATGCGAGCAACGAGTTACTTAATGAGGAAGAATTGGATTTGGATAAACGTTGCACAATATGCGGCAAGCAATTCAAAcgcaaacaacatttaaaacgCCATTTTGCGAATGTGCATAAGCAACACAACATCAAGGAAGAGCCCGAATTGATGGATGAACAAGAAATCGACTTGAAAAGCCCGCTGCTAAGTGAGAATATTGCAATTGACGAAAGCAATGAAGGCATGGTCTCAGCCAACTGGTCAAAATGTGCCGACACTGAAGCAGCTGGTGAAATTGCTAATAAAGCAGACGCTGATACGAATCCGTTTACAAGCGATGAAGAACTTGATCATTTGCTCGAAAACGATGACGCTTTTAAGAAACTGCAAAATGTTATCAAGGTTGAGCCTGATTACAACGCATATCAAAACGCTGATATAACAAAAGATATCGAAACTGCCAAAGCAAGTATGGCGCTGTGTGCGGAAAATGTTTCTGAAGCAACTAATGAATGGCATGAGTACTTGGATGCTGCATCCGACAATTCAGACAATGCTTCAAGTAAAGTTGCAGATGAAAGTTCAGTAGTGAAAAATGTGAAGGTTGAAATTGTGCGAGAGTATCTGCACACACAAAATGCTGACGTGAATAAACGCAAGAAGCGCGTAAAGCAtgataaaaatgctgaaaaccGTTGCGAGCAATGTGGGCGCATATTTACGCGCTATTGTCATCTGCAACGGCATATGTTATCGCATCTCGAAGAAAAACCGCACGCCTGTCCACATTGCGAAAAACGCTTTGCCCGCAGTGATCACCTGAAAAAGCACATAATTAGCCTGCACGAAGCAAAGGAGTTCAAGTGCGAGAAGTGTGATGCAGCTTTCGCGCGCGACGACATGTTACGGCGCCACAAGGAGAGTCGGCATGGCGAGGGTGATGGACTAGAATCGCACAAAGTGCATTCGTGCATCTATTGCGAAAAGAAGTTCGTTAGCAAAAGCTATCTGCAGAAGCACATACTTTTACATACCGATCGTTTATTTGCCTGTCGGCATTGCGATGAATCGTTTAAGGAACGCAAGCAGTGGCGTGAACATGAACGCATACATACAGCGAACATGCGTAATTATTTGTGCAGCATTTGTGGTGATAGTTTTGTGCGTGCTGACTATTTACGTGTACACATGCGCCGACACAATGGTGAGAAACCATATAAATGCCAATACTGTGACAAAGGCTTTCCGCGTGCGACGGACTTAAAAATGCACGAACGCTACCACACCGGCACCAAGCCCAATCTGTGCACGCTCTGTGGCAAGGGTTTTCACAGAGCTTATAATCTCACCATACACATGCGCACGCATACCGGTGAACGCCCTTATAAATGTGAGCAATGCCCAAAGAGTTTCACACAAAGCAATGACTTGAAAGCGCATATAAGACGGCATACCGGCGAACGTTTCAAGCAGCATGCGTTTAGCGTGCATGGTATTAAAATGGCACCGACAACGGGACGCTTGGCAAAAGTTAATGACGAACATGTGCAGCCCCCACAGCCGGAAGTATTGCCAAAACTGGAGTTGCACTTAAGTGAtaatatattaacatttaacacAATCACATGCGCAGGCGCACATATACCAGCTGGTACTggtaaaaacatttcattaaacgGCACAACAAATCAGCTATCGAAATGTCACGACAACACAGCGCCAATTATGGACTATGCACCCACCAATGTAGAGGGTATGTAa
- Protein Sequence
- MSFDGKVDSEKVCRICLQEHLELYLIFDETYATDDTPTIAEVISEITRYQVERFDDLPHQVCFDCMRWAQNAYRFRRAAEQAYRQLIQQIGVQKECKIKANYNDVEVQTDASLFYVCEICNRNFTTIVQLQEHRMCAHGHMNGRKGKKKCNVCGVYMRLRQLEKHILQAHPSCTNALNYSCKFCVKKFHLKSAFKRHLNIAHQLSKEEAAKTLADMLCEDKNTENSEDVDSLEYASNELLNEEELDLDKRCTICGKQFKRKQHLKRHFANVHKQHNIKEEPELMDEQEIDLKSPLLSENIAIDESNEGMVSANWSKCADTEAAGEIANKADADTNPFTSDEELDHLLENDDAFKKLQNVIKVEPDYNAYQNADITKDIETAKASMALCAENVSEATNEWHEYLDAASDNSDNASSKVADESSVVKNVKVEIVREYLHTQNADVNKRKKRVKHDKNAENRCEQCGRIFTRYCHLQRHMLSHLEEKPHACPHCEKRFARSDHLKKHIISLHEAKEFKCEKCDAAFARDDMLRRHKESRHGEGDGLESHKVHSCIYCEKKFVSKSYLQKHILLHTDRLFACRHCDESFKERKQWREHERIHTANMRNYLCSICGDSFVRADYLRVHMRRHNGEKPYKCQYCDKGFPRATDLKMHERYHTGTKPNLCTLCGKGFHRAYNLTIHMRTHTGERPYKCEQCPKSFTQSNDLKAHIRRHTGERFKQHAFSVHGIKMAPTTGRLAKVNDEHVQPPQPEVLPKLELHLSDNILTFNTITCAGAHIPAGTGKNISLNGTTNQLSKCHDNTAPIMDYAPTNVEGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -